GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000326-TA|BGIBMGA000326-PA|IPR000618|Insect cuticle
protein
         (131 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   2.9  
SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit L15|...    25   2.9  
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    24   6.7  
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    24   8.9  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    24   8.9  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 54  QKGELKKVGDVEALEVQGEFKYPGENGQDISLTYTADENGFHPSGS---HLPTS 104
           QK + K +      E+        +N +++  +   D + FHPS S    +PTS
Sbjct: 25  QKSQKKSISPSSGSELPNFKTTISQNNEEVKTSLKEDSSKFHPSASAPIFVPTS 78


>SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 47  GNGISADQKGELKKVGDVEALE--VQG--EFKYPGENGQDISLTYTADENGFHPSGSHLP 102
           G  ++AD+ G LK    +E  +  VQ   + K  G +   +  +  A     HPS    P
Sbjct: 112 GVELTADEPGLLKTAISIEVSKATVQAIQQIKNAGGSITTVYFSPLALRAHLHPSSFRTP 171

Query: 103 TSPPIP 108
             PP+P
Sbjct: 172 PRPPLP 177


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 60  KVGDVEALEVQGEFKYPGENGQDISLTYTADENGFHPSGS 99
           K+    +++  G ++ PG  GQ+ + +Y  +E     SGS
Sbjct: 437 KLAAKPSVKPAGAYRPPGARGQNSTFSYRREEIDVMSSGS 476


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 23.8 bits (49), Expect = 8.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 51  SADQKGELKKVGDVEALEVQGEFKYPGENGQDI 83
           SAD + E +  G  E  E+ GE +  G N  D+
Sbjct: 220 SADSESEEEVDGHSEGKELAGESEEEGSNVDDV 252


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 23.8 bits (49), Expect = 8.9
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 76  PGENGQDISLTYTADENGFHPSGSHLPTSPPIPEAIQR 113
           P E    + L  ++ ++   P+G   PTS P    I+R
Sbjct: 454 PTETISVVRLRRSSSQSNIEPNGVRSPTSSPTGSPIRR 491


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.310    0.135    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 537,186
Number of Sequences: 5004
Number of extensions: 21660
Number of successful extensions: 24
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 5
length of query: 131
length of database: 2,362,478
effective HSP length: 66
effective length of query: 65
effective length of database: 2,032,214
effective search space: 132093910
effective search space used: 132093910
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 49 (23.8 bits)