GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000326-TA|BGIBMGA000326-PA|IPR000618|Insect cuticle
protein
         (131 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21811| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.7e-06)           29   1.2  
SB_58221| Best HMM Match : TBC (HMM E-Value=2.9e-08)                   29   1.6  
SB_17317| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_2054| Best HMM Match : DUF1547 (HMM E-Value=8)                      27   6.6  
SB_27561| Best HMM Match : DUF720 (HMM E-Value=0.47)                   27   6.6  

>SB_21811| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.7e-06)
          Length = 925

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 12/22 (54%), Positives = 16/22 (72%)

Query: 80  GQDISLTYTADENGFHPSGSHL 101
           G+  S +YTA E+G HPSG +L
Sbjct: 787 GERSSFSYTALESGSHPSGEYL 808


>SB_58221| Best HMM Match : TBC (HMM E-Value=2.9e-08)
          Length = 580

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 27  IVRDDSQINGDGSYQYAFETGNGIS 51
           ++ D S IN DG+YQ   E G G+S
Sbjct: 533 VMNDLSIINSDGTYQEGAEPGQGVS 557


>SB_17317| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 19  QGPTEPIPIVRDDSQINGDGSYQYAFETGNGISADQKGELKKVGDVEALEVQGEFKYPGE 78
           +GP   I IV   +Q +    + +  ++G+G S  + G+  K GD  A+   G    PG 
Sbjct: 207 EGPRFSIRIVLH-AQYSSVAVFDFKGDSGDGGSDGKAGKEGKAGDRGAIGKTGNAGLPGS 265

Query: 79  NG 80
            G
Sbjct: 266 TG 267


>SB_2054| Best HMM Match : DUF1547 (HMM E-Value=8)
          Length = 192

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 48  NGISADQKGELKKVGDVEALEVQGEFKYPGENGQDISLTYTADENG 93
           + +S + K   ++V D+E  E + E     EN Q++S   +A+ NG
Sbjct: 65  SSVSDNSKSRYEEV-DIEPAETKNESALVDENVQNLSEDLSAENNG 109


>SB_27561| Best HMM Match : DUF720 (HMM E-Value=0.47)
          Length = 779

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 49  GISADQKGELKKVGDVEALEVQGEFKYPGENGQDISLTYTADENGFHPSGSHLPTS-PPI 107
           GI+   K E  K  +   +    +     E+   +S+T   DE   H +G  LP   PP+
Sbjct: 533 GINLQHKTENDKRNERRRIYTSSKENTSEEDENAVSITLAPDEVVCHNAGFPLPEEVPPV 592

Query: 108 P 108
           P
Sbjct: 593 P 593


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.310    0.135    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,076,407
Number of Sequences: 59808
Number of extensions: 171722
Number of successful extensions: 288
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 286
Number of HSP's gapped (non-prelim): 5
length of query: 131
length of database: 16,821,457
effective HSP length: 75
effective length of query: 56
effective length of database: 12,335,857
effective search space: 690807992
effective search space used: 690807992
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 55 (26.2 bits)