GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000325-TA|BGIBMGA000325-PA|IPR000618|Insect cuticle
protein
         (105 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      20   6.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      20   6.1  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    20   6.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    19   8.0  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    19   8.0  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    19   8.0  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 19.8 bits (39), Expect = 6.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)

Query: 87  FLATLPPPAHDTREYIRHP 105
           F   LPPP H   +  R+P
Sbjct: 731 FDVKLPPPPHPHHQPPRNP 749


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 19.8 bits (39), Expect = 6.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)

Query: 87  FLATLPPPAHDTREYIRHP 105
           F   LPPP H   +  R+P
Sbjct: 623 FDVKLPPPPHPHHQPPRNP 641


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
          protein.
          Length = 370

 Score = 19.8 bits (39), Expect = 6.1
 Identities = 6/13 (46%), Positives = 10/13 (76%)

Query: 69 AHLPTAPPVPAEI 81
          A+ P +PP P+E+
Sbjct: 68 ANSPPSPPAPSEL 80


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 6/15 (40%), Positives = 9/15 (60%)

Query: 91   LPPPAHDTREYIRHP 105
            +PPP H T + +  P
Sbjct: 1805 VPPPQHSTTQSLVDP 1819


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 91  LPPPAHDTREYIRHP 105
           LPP   DTR  + +P
Sbjct: 25  LPPSLSDTRPMLPYP 39


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
          protein protein.
          Length = 371

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 7/12 (58%), Positives = 7/12 (58%)

Query: 88 LATLPPPAHDTR 99
          L T PPP  D R
Sbjct: 34 LKTTPPPEEDNR 45


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.137    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,311
Number of Sequences: 317
Number of extensions: 979
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 105
length of database: 114,650
effective HSP length: 49
effective length of query: 56
effective length of database: 99,117
effective search space:  5550552
effective search space used:  5550552
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.2 bits)
S2: 38 (19.4 bits)