Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000325-TA|BGIBMGA000325-PA|IPR000618|Insect cuticle
protein
(105 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1127 + 8930593-8932681,8932812-8933401 27 2.2
05_01_0281 + 2186500-2187435,2187518-2187616,2187707-2187772,218... 27 2.9
02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486 27 2.9
06_03_1310 + 29238644-29240260 27 3.8
05_01_0564 - 4919294-4919391,4919491-4919620,4919700-4919789,491... 27 3.8
02_04_0312 - 21942310-21943356 27 3.8
01_07_0337 + 42838260-42838344,42838972-42839084,42839652-428397... 27 3.8
09_06_0172 + 21329904-21331512,21331595-21331740,21332333-213325... 26 5.0
06_03_0743 + 24069752-24070483,24071890-24072345 26 5.0
09_06_0083 + 20753191-20754480 26 6.6
06_03_1406 - 29949367-29949556,29949753-29949837,29950625-299507... 26 6.6
05_04_0352 + 20533846-20534038,20534117-20534391,20535134-20535634 26 6.6
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 25 8.8
03_05_0735 - 27247767-27248285,27249030-27249318,27250594-27251093 25 8.8
>01_01_1127 + 8930593-8932681,8932812-8933401
Length = 892
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 72 PTAPPVPAEIQKALDFLATLPPPAHDTR 99
P PP PA DFL + PPP + R
Sbjct: 13 PPPPPPPAACAARYDFLNSKPPPNYVAR 40
>05_01_0281 +
2186500-2187435,2187518-2187616,2187707-2187772,
2187850-2188266
Length = 505
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 68 GAHLPTAPPVPAEIQK-ALDFLATLPPPAHD 97
GA P PP P Q AT PPAHD
Sbjct: 19 GAPAPLRPPPPPPFQPFTCSAAATTSPPAHD 49
>02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486
Length = 296
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/23 (56%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 75 PPVPAEIQKALDFLATLPPP-AH 96
PP PA ALD LPPP AH
Sbjct: 221 PPAPATAATALDLNLNLPPPLAH 243
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/28 (42%), Positives = 12/28 (42%)
Query: 70 HLPTAPPVPAEIQKALDFLATLPPPAHD 97
H P PP P AL PPP HD
Sbjct: 5 HSPPPPPAPPSPPPALPCDPMPPPPRHD 32
>06_03_1310 + 29238644-29240260
Length = 538
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 66 PQGAHLPTAPPVPAEIQKALDFLATLPPPAH 96
P +HLP PP +E K+ +T PP +H
Sbjct: 404 PTPSHLPPPPPTYSESPKSSMPPSTSPPSSH 434
>05_01_0564 -
4919294-4919391,4919491-4919620,4919700-4919789,
4919882-4919987,4920087-4920187,4920347-4920442,
4920549-4920648,4920761-4920897,4920980-4921111,
4921222-4921320,4921397-4921594,4921715-4921892,
4922020-4922075,4922168-4922320,4922422-4922514,
4922605-4922706,4922817-4922878,4922995-4923090,
4923354-4923453,4923546-4923617,4923728-4923775,
4923853-4923996
Length = 796
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 78 PAEIQKALDFLATLPPPAHDTREY 101
PA++ AL FL+TL P DT ++
Sbjct: 92 PAQLDAALSFLSTLGPDPLDTAKF 115
>02_04_0312 - 21942310-21943356
Length = 348
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 69 AHLPTAPPVPAEIQKALDFLATLPPPAHDT 98
A++ APP P +L+ PPPAH+T
Sbjct: 172 ANVLDAPPPPPPPPPSLEQDTASPPPAHET 201
>01_07_0337 +
42838260-42838344,42838972-42839084,42839652-42839729,
42839831-42840054,42840084-42840128,42840156-42840264
Length = 217
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/16 (62%), Positives = 10/16 (62%)
Query: 63 GFQPQGAHLPTAPPVP 78
GF P G H P APP P
Sbjct: 10 GFLPSGRHQPYAPPPP 25
>09_06_0172 +
21329904-21331512,21331595-21331740,21332333-21332556,
21333689-21334448
Length = 912
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 67 QGAHLPTAPPVPAEIQKALDFLA-TLPPPAHDTR 99
+G +LPTA PVPA A A LPP A R
Sbjct: 71 KGDNLPTASPVPANPAIASSSAAQPLPPVAKQVR 104
>06_03_0743 + 24069752-24070483,24071890-24072345
Length = 395
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 57 YLADENGFQPQGAHLPTAPPVPAEIQKALDFLATLPPPAHDTREYIR 103
Y A +G H P PP I++AL L+ P HD + R
Sbjct: 35 YAASFSGLYSSYLH-PPPPPSSPPIREALPLLSLTPSTTHDDDHHHR 80
>09_06_0083 + 20753191-20754480
Length = 429
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 72 PTAPPVPAEIQKALDFLATLPPPAHDT 98
P PP PA+ A L PPP DT
Sbjct: 243 PLLPPPPADATPATPDLPLPPPPPADT 269
>06_03_1406 -
29949367-29949556,29949753-29949837,29950625-29950791,
29951232-29952049
Length = 419
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 68 GAHLPTAPPVPAEIQKALDFLATLPPPAHD 97
G P++P PA +D A PPP+ D
Sbjct: 43 GPSSPSSPMSPASPATPVDAYANAPPPSED 72
>05_04_0352 + 20533846-20534038,20534117-20534391,20535134-20535634
Length = 322
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 68 GAHLPTAPPVPAEIQKALDFLATLPPPAHDTREYIRH 104
GA P P P I+KAL F A P D +I H
Sbjct: 103 GADKPVGTPRPVAIKKALVFYAGKAPKG-DKTNWIMH 138
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 25.4 bits (53), Expect = 8.8
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 7/41 (17%)
Query: 66 PQGAHLPTAPPVPAEIQKAL-DFLA------TLPPPAHDTR 99
PQ +HLP PP P + D LA PPP DTR
Sbjct: 352 PQPSHLPPLPPRPPTMPSMQPDMLAPGVPRFPPPPPPPDTR 392
>03_05_0735 - 27247767-27248285,27249030-27249318,27250594-27251093
Length = 435
Score = 25.4 bits (53), Expect = 8.8
Identities = 15/52 (28%), Positives = 20/52 (38%)
Query: 54 HVQYLADENGFQPQGAHLPTAPPVPAEIQKALDFLATLPPPAHDTREYIRHP 105
H L + P H PT P A +K + +LP P H + HP
Sbjct: 197 HDLILCNSQSRCPTVQHRPTPPDGGAPPKKVVRLWRSLPNPTHSSPVAQLHP 248
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.137 0.426
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,406,906
Number of Sequences: 37544
Number of extensions: 128240
Number of successful extensions: 421
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 408
Number of HSP's gapped (non-prelim): 18
length of query: 105
length of database: 14,793,348
effective HSP length: 72
effective length of query: 33
effective length of database: 12,090,180
effective search space: 398975940
effective search space used: 398975940
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)
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