GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000325-TA|BGIBMGA000325-PA|IPR000618|Insect cuticle
protein
         (105 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52048| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.56 
SB_10274| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.56 
SB_47305| Best HMM Match : I-set (HMM E-Value=0)                       28   1.3  
SB_39621| Best HMM Match : Extensin_2 (HMM E-Value=0.078)              28   1.7  
SB_18909| Best HMM Match : RVT_1 (HMM E-Value=1.2e-28)                 27   2.2  
SB_5953| Best HMM Match : FeS (HMM E-Value=5.5)                        26   5.2  
SB_38797| Best HMM Match : Extensin_2 (HMM E-Value=2.3)                26   6.9  
SB_25929| Best HMM Match : RNA_pol_Rpb2_6 (HMM E-Value=9.1e-11)        26   6.9  
SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)           26   6.9  
SB_15610| Best HMM Match : DUF1174 (HMM E-Value=7.8)                   26   6.9  
SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.1  

>SB_52048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 68  GAHLPTAPPVPAEIQKALDFLATLPPPAHDTRE 100
           G HLP A P+    ++++D + T  PP ++  E
Sbjct: 36  GPHLPPAQPIEKSKRRSIDVMPTEEPPLYNAGE 68


>SB_10274| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 844

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 68  GAHLPTAPPVPAEIQKALDFLATLPPPAHDTRE 100
           G HLP A P+    ++++D + T  PP ++  E
Sbjct: 328 GPHLPPAQPIEKSKRRSIDVMPTEEPPLYNAGE 360


>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
          Length = 5832

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/60 (23%), Positives = 24/60 (40%)

Query: 3    EFRSFGEHCYETGNGISAEEQGYIKNQGIPXXXXXXXXXXXXXXAPDGQVIHVQYLADEN 62
            + RS G+H Y      + E+ G  K +G+                PDG  +  ++L+  N
Sbjct: 3635 DIRSRGDHYYLVIPSAAPEDSGLYKCEGVSTLGTSSKTFDVKAGVPDGSRVTPKFLSHLN 3694


>SB_39621| Best HMM Match : Extensin_2 (HMM E-Value=0.078)
          Length = 539

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)

Query: 72  PTAPPVPAEIQKALDFLATLPPPA 95
           P APP P E +  LD  A+LPPPA
Sbjct: 417 PPAPP-PLEEKTPLDKRASLPPPA 439


>SB_18909| Best HMM Match : RVT_1 (HMM E-Value=1.2e-28)
          Length = 591

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 53  IHVQYLA-DENGFQPQGAHLPTAPPVPAEIQKALDFLATL 91
           +HV+ L+ D    Q QG   P  P +P + QK+  F  TL
Sbjct: 547 VHVKVLSRDRKLRQEQGTAEPVLPVLPEQYQKSARFARTL 586


>SB_5953| Best HMM Match : FeS (HMM E-Value=5.5)
          Length = 424

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 61  ENGFQPQGAHLPTAPPVPAEIQKALDFLATLPPPAHDTR 99
           E   Q Q A L T PP+P+   +A +  AT P   H  R
Sbjct: 194 ERSRQQQPAGLATTPPIPSPTDRAKE--ATCPECRHTFR 230


>SB_38797| Best HMM Match : Extensin_2 (HMM E-Value=2.3)
          Length = 308

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 73  TAPPVPAEIQKALDFLATLPPPAHD 97
           T P  PAE + A + + ++P PAH+
Sbjct: 114 TKPEEPAEAETAPEAVESVPEPAHE 138


>SB_25929| Best HMM Match : RNA_pol_Rpb2_6 (HMM E-Value=9.1e-11)
          Length = 387

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)

Query: 60  DENGFQPQGAHLPTAPP 76
           D +GF P GAHL T  P
Sbjct: 302 DADGFPPLGAHLSTGDP 318


>SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)
          Length = 1064

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 60  DENGFQPQGAHLPTAPPVPAEIQKALDFLATLPPPAHDT 98
           D    QP   + P  PPV       +D +  +PPP+ D+
Sbjct: 269 DVTSIQPTSKYQPP-PPVTRVYDPKVDIIRGVPPPSGDS 306


>SB_15610| Best HMM Match : DUF1174 (HMM E-Value=7.8)
          Length = 200

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 73  TAPPVPAEIQKALDFLATLPPPAHD 97
           T P  PAE + A + + ++P PAH+
Sbjct: 114 TKPEEPAEAETAPEAVESVPEPAHE 138


>SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 955

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)

Query: 75  PPVPAEIQKALDFLATLPP-PAH 96
           PP+P   ++ALD    LPP P H
Sbjct: 566 PPLPPAPKRALDLKPNLPPVPTH 588


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.137    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,548,154
Number of Sequences: 59808
Number of extensions: 122510
Number of successful extensions: 237
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 230
Number of HSP's gapped (non-prelim): 12
length of query: 105
length of database: 16,821,457
effective HSP length: 72
effective length of query: 33
effective length of database: 12,515,281
effective search space: 413004273
effective search space used: 413004273
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)