Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000325-TA|BGIBMGA000325-PA|IPR000618|Insect cuticle
protein
(105 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L15188-6|AAA27950.2| 1132|Caenorhabditis elegans Gex interacting... 28 1.5
L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting... 28 1.5
L15188-4|AAM22026.1| 1697|Caenorhabditis elegans Gex interacting... 28 1.5
Z71264-1|CAA95828.1| 998|Caenorhabditis elegans Hypothetical pr... 26 4.5
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 26 4.5
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 26 4.5
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 26 4.5
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 26 4.5
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 26 4.5
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 26 4.5
AL132862-26|CAB60561.1| 874|Caenorhabditis elegans Hypothetical... 26 6.0
U88314-14|AAF99890.1| 794|Caenorhabditis elegans Hypothetical p... 25 7.9
U88314-13|AAL16322.1| 1062|Caenorhabditis elegans Hypothetical p... 25 7.9
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro... 25 7.9
>L15188-6|AAA27950.2| 1132|Caenorhabditis elegans Gex interacting
protein protein8, isoform a protein.
Length = 1132
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 68 GAHLPTAPPVPAEIQKALDFLATLPPPAHDTRE 100
G H P PPVP IQK PP DT+E
Sbjct: 654 GGHKPDFPPVP-RIQKPSTSSQPPPPEPMDTKE 685
>L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting
protein protein8, isoform b protein.
Length = 1780
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 68 GAHLPTAPPVPAEIQKALDFLATLPPPAHDTRE 100
G H P PPVP IQK PP DT+E
Sbjct: 654 GGHKPDFPPVP-RIQKPSTSSQPPPPEPMDTKE 685
>L15188-4|AAM22026.1| 1697|Caenorhabditis elegans Gex interacting
protein protein8, isoform c protein.
Length = 1697
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 68 GAHLPTAPPVPAEIQKALDFLATLPPPAHDTRE 100
G H P PPVP IQK PP DT+E
Sbjct: 654 GGHKPDFPPVP-RIQKPSTSSQPPPPEPMDTKE 685
>Z71264-1|CAA95828.1| 998|Caenorhabditis elegans Hypothetical
protein K07G5.1 protein.
Length = 998
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 58 LADENGFQPQGAHLPTAPPVPAEIQKALDFLA-TLPPPAHDTRE 100
L N P GA P PP P + + + T PPP D E
Sbjct: 938 LPQRNRVGPGGAPPPLLPPKPEPRSRLIGMTSPTTPPPTADDDE 981
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 26.2 bits (55), Expect = 4.5
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 52 VIHVQYLAD-----ENGFQPQGAHLPTAPPVPAEIQKALDFLATLPPPAHD---TREYIR 103
V HV+ +AD +N F+ + A IQKAL+ + T+P HD T +
Sbjct: 279 VDHVKEIADRMVQYQNYFKEFVKYSARAHGSSKSIQKALELVTTIPQRVHDLEFTNNLKQ 338
Query: 104 HP 105
HP
Sbjct: 339 HP 340
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 26.2 bits (55), Expect = 4.5
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 52 VIHVQYLAD-----ENGFQPQGAHLPTAPPVPAEIQKALDFLATLPPPAHD---TREYIR 103
V HV+ +AD +N F+ + A IQKAL+ + T+P HD T +
Sbjct: 279 VDHVKEIADRMVQYQNYFKEFVKYSARAHGSSKSIQKALELVTTIPQRVHDLEFTNNLKQ 338
Query: 104 HP 105
HP
Sbjct: 339 HP 340
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 26.2 bits (55), Expect = 4.5
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 52 VIHVQYLAD-----ENGFQPQGAHLPTAPPVPAEIQKALDFLATLPPPAHD---TREYIR 103
V HV+ +AD +N F+ + A IQKAL+ + T+P HD T +
Sbjct: 279 VDHVKEIADRMVQYQNYFKEFVKYSARAHGSSKSIQKALELVTTIPQRVHDLEFTNNLKQ 338
Query: 104 HP 105
HP
Sbjct: 339 HP 340
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 26.2 bits (55), Expect = 4.5
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 52 VIHVQYLAD-----ENGFQPQGAHLPTAPPVPAEIQKALDFLATLPPPAHD---TREYIR 103
V HV+ +AD +N F+ + A IQKAL+ + T+P HD T +
Sbjct: 279 VDHVKEIADRMVQYQNYFKEFVKYSARAHGSSKSIQKALELVTTIPQRVHDLEFTNNLKQ 338
Query: 104 HP 105
HP
Sbjct: 339 HP 340
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 26.2 bits (55), Expect = 4.5
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 52 VIHVQYLAD-----ENGFQPQGAHLPTAPPVPAEIQKALDFLATLPPPAHD---TREYIR 103
V HV+ +AD +N F+ + A IQKAL+ + T+P HD T +
Sbjct: 279 VDHVKEIADRMVQYQNYFKEFVKYSARAHGSSKSIQKALELVTTIPQRVHDLEFTNNLKQ 338
Query: 104 HP 105
HP
Sbjct: 339 HP 340
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 26.2 bits (55), Expect = 4.5
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 52 VIHVQYLAD-----ENGFQPQGAHLPTAPPVPAEIQKALDFLATLPPPAHD---TREYIR 103
V HV+ +AD +N F+ + A IQKAL+ + T+P HD T +
Sbjct: 279 VDHVKEIADRMVQYQNYFKEFVKYSARAHGSSKSIQKALELVTTIPQRVHDLEFTNNLKQ 338
Query: 104 HP 105
HP
Sbjct: 339 HP 340
>AL132862-26|CAB60561.1| 874|Caenorhabditis elegans Hypothetical
protein Y73F8A.33 protein.
Length = 874
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 66 PQGAHLPTAPPVPAEIQKALDFLATLPPP 94
P+ +LP AP PA I D + PPP
Sbjct: 80 PKVTNLPDAPVDPATISLEDDIIVLPPPP 108
>U88314-14|AAF99890.1| 794|Caenorhabditis elegans Hypothetical
protein C46H11.11a protein.
Length = 794
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 61 ENGFQ--PQGAHLPTAPPVPAEIQKALDFLATLPPP 94
ENG + P G +P PP P+ I +PPP
Sbjct: 222 ENGMRGGPVGVGVPPPPPPPSAIPLPPRLQGGIPPP 257
>U88314-13|AAL16322.1| 1062|Caenorhabditis elegans Hypothetical
protein C46H11.11b protein.
Length = 1062
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 61 ENGFQ--PQGAHLPTAPPVPAEIQKALDFLATLPPP 94
ENG + P G +P PP P+ I +PPP
Sbjct: 490 ENGMRGGPVGVGVPPPPPPPSAIPLPPRLQGGIPPP 525
>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
protein.
Length = 1346
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 61 ENGFQ--PQGAHLPTAPPVPAEIQKALDFLATLPPP 94
ENG + P G +P PP P+ I +PPP
Sbjct: 757 ENGMRGGPVGVGVPPPPPPPSAIPLPPRLQGGIPPP 792
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.316 0.137 0.426
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,523
Number of Sequences: 27539
Number of extensions: 97978
Number of successful extensions: 242
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 241
Number of HSP's gapped (non-prelim): 14
length of query: 105
length of database: 12,573,161
effective HSP length: 71
effective length of query: 34
effective length of database: 10,617,892
effective search space: 361008328
effective search space used: 361008328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)
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