GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000325-TA|BGIBMGA000325-PA|IPR000618|Insect cuticle
protein
         (105 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10...    29   0.80 
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10...    29   0.80 
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ...    27   2.4  
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ...    27   2.4  
At3g31540.1 68416.m04025 hypothetical protein                          27   3.2  
At1g77450.1 68414.m09019 no apical meristem (NAM) family protein...    27   3.2  
At1g75380.3 68414.m08757 wound-responsive protein-related simila...    27   3.2  
At1g75380.2 68414.m08756 wound-responsive protein-related simila...    27   3.2  
At1g75380.1 68414.m08755 wound-responsive protein-related simila...    27   3.2  
At3g05545.1 68416.m00609 transcription factor, putative / zinc f...    26   4.3  
At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family...    25   7.5  
At5g32590.1 68418.m03867 myosin heavy chain-related similar to M...    25   9.9  

>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
           WD-40 repeats (PF00400) (1 weak)
          Length = 1131

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)

Query: 63  GFQPQGAH---LPTAPPVPAEIQKALDFLATLPPPA 95
           GF P GAH    PTA PVP  +   +   +++P PA
Sbjct: 229 GFPPLGAHGPFQPTASPVPTPLAGWMSSPSSVPHPA 264


>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
           WD-40 repeats (PF00400) (1 weak)
          Length = 1131

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)

Query: 63  GFQPQGAH---LPTAPPVPAEIQKALDFLATLPPPA 95
           GF P GAH    PTA PVP  +   +   +++P PA
Sbjct: 229 GFPPLGAHGPFQPTASPVPTPLAGWMSSPSSVPHPA 264


>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
           WD-40 repeats domain (PF00400) (6 weak)
          Length = 1120

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 58  LADENGFQPQGAH---LPTAPPVPAEIQKALDFLATLPPPA 95
           L    GF P GAH    PT  PVP  +   +   +++P PA
Sbjct: 224 LPKAEGFPPLGAHGPFQPTPSPVPTPLAGWMSSPSSVPHPA 264


>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
           WD-40 repeats domain (PF00400) (6 weak)
          Length = 1120

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 58  LADENGFQPQGAH---LPTAPPVPAEIQKALDFLATLPPPA 95
           L    GF P GAH    PT  PVP  +   +   +++P PA
Sbjct: 224 LPKAEGFPPLGAHGPFQPTPSPVPTPLAGWMSSPSSVPHPA 264


>At3g31540.1 68416.m04025 hypothetical protein
          Length = 699

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 55  VQYLADENGFQPQ-GAHLPTAPPVPAEIQK 83
           V+ LADE G   + G HLP A  +P+E Q+
Sbjct: 670 VEALADEMGVTDKSGLHLPAADVLPSEPQE 699


>At1g77450.1 68414.m09019 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to GRAB1 protein GB:CAA09371, a novel member of
           the NAC domain family
          Length = 253

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 68  GAHLPTAPPVPAEIQKALDFLATLPPPAHDTREYIRH 104
           GA  P   P P  I+KAL F +  PP    T  +I H
Sbjct: 95  GADKPIGRPKPVGIKKALVFYSGKPPNGEKT-NWIMH 130


>At1g75380.3 68414.m08757 wound-responsive protein-related similar
           to wound inducive gene GI:8096273 from [Nicotiana
           tabacum]
          Length = 325

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/28 (46%), Positives = 14/28 (50%)

Query: 66  PQGAHLPTAPPVPAEIQKALDFLATLPP 93
           PQG HLP   P PA + K  D    L P
Sbjct: 122 PQGGHLPDYAPHPAIVLKMEDGTGLLLP 149


>At1g75380.2 68414.m08756 wound-responsive protein-related similar
           to wound inducive gene GI:8096273 from [Nicotiana
           tabacum]
          Length = 325

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/28 (46%), Positives = 14/28 (50%)

Query: 66  PQGAHLPTAPPVPAEIQKALDFLATLPP 93
           PQG HLP   P PA + K  D    L P
Sbjct: 122 PQGGHLPDYAPHPAIVLKMEDGTGLLLP 149


>At1g75380.1 68414.m08755 wound-responsive protein-related similar
           to wound inducive gene GI:8096273 from [Nicotiana
           tabacum]
          Length = 325

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/28 (46%), Positives = 14/28 (50%)

Query: 66  PQGAHLPTAPPVPAEIQKALDFLATLPP 93
           PQG HLP   P PA + K  D    L P
Sbjct: 122 PQGGHLPDYAPHPAIVLKMEDGTGLLLP 149


>At3g05545.1 68416.m00609 transcription factor, putative / zinc
           finger (C3HC4 type RING finger) family protein similar
           to VIP2 protein [Avena fatua] gi|6996144|emb|CAB75506;
           contains Pfam domain PF00097: Zinc finger, C3HC4 type
           (RING finger)
          Length = 425

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 5/46 (10%)

Query: 64  FQPQGAHL-----PTAPPVPAEIQKALDFLATLPPPAHDTREYIRH 104
           F   GAH+     PT PP  A   +A       P P H TR +  H
Sbjct: 241 FSASGAHVGSPTQPTPPPAAARTSRANGSDMIRPRPPHFTRPFHGH 286


>At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 554

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 66  PQGAHLPTAPPVPAEIQKALDFLATLPPP 94
           P  A LP  PP+P  ++K +     LPPP
Sbjct: 227 PGRAALPPPPPLPMAVRKGV-AAPPLPPP 254


>At5g32590.1 68418.m03867 myosin heavy chain-related similar to
           Myosin heavy chain, non-muscle (Zipper protein) (Myosin
           II)(SP:Q99323) {Drosophila melanogaster}
          Length = 761

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 60  DENGFQPQGAHLPTAPPVPAEIQKALDFLATLPPPAHDTREYI 102
           D++G  P     P AP VP  I +A+     LPP A+  +  I
Sbjct: 678 DQSG--PSDPMEPEAPIVPVTIPEAVAIPPELPPSANSEKVVI 718


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.137    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,501,244
Number of Sequences: 28952
Number of extensions: 87708
Number of successful extensions: 223
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 214
Number of HSP's gapped (non-prelim): 13
length of query: 105
length of database: 12,070,560
effective HSP length: 71
effective length of query: 34
effective length of database: 10,014,968
effective search space: 340508912
effective search space used: 340508912
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)