GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000324-TA|BGIBMGA000324-PA|IPR000618|Insect cuticle
protein
         (114 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    25   2.2  
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    25   2.2  
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-...    25   3.0  
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha...    25   3.0  
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc...    25   3.9  
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo...    24   5.2  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    24   5.2  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    24   5.2  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    24   5.2  
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom...    24   6.8  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    24   6.8  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    24   6.8  
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    23   9.0  

>SPBC30B4.04c |sol1||SWI/SNF complex subunit
          Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 14/51 (27%), Positives = 20/51 (39%)

Query: 19 PPTEDYPKIVRSEFDASPDGAYNYNFETSNGIVRSETGELKEALDDDNKPH 69
          P    YP   +S        AY   F TS G+  +E G        +N+P+
Sbjct: 13 PTAVSYPTQGQSYNTQEEQPAYPQRFSTSQGMYAAEYGNANMMNTSENEPN 63


>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 12/37 (32%), Positives = 17/37 (45%)

Query: 54  ETGELKEALDDDNKPHVIVAVRGSYSYTNTDGKPETI 90
           ETG   E  D++    V+V  +   +    DGKP  I
Sbjct: 85  ETGTYPEKDDENTNLQVVVDTKAQLNVNVNDGKPNDI 121


>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
           L-lysine forming] |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 368

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 12/41 (29%), Positives = 21/41 (51%)

Query: 58  LKEALDDDNKPHVIVAVRGSYSYTNTDGKPETITYFADETG 98
           LKE  ++DN P     ++ ++ Y N +G  E ++ F    G
Sbjct: 76  LKELPENDNSPLKHTHIQFAHCYKNQEGWREVLSRFPAGNG 116


>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 453

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 12/52 (23%), Positives = 23/52 (44%)

Query: 39  AYNYNFETSNGIVRSETGELKEALDDDNKPHVIVAVRGSYSYTNTDGKPETI 90
           A   N    + ++      +++++D   +PHV+VA  G  +        ETI
Sbjct: 97  ALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLADLIRSNGEETI 148


>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 713

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 11/46 (23%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 70  VIVAVRGSYSYTNTDGKPETITYFADETGYH--AQGESIPQVASAT 113
           V   + G +SY N D KP  +  + + + ++  A  +++P + + T
Sbjct: 18  VFTVIGGEFSYDNIDKKPILVASYPEGSRFNVSASIKTLPDLVTLT 63


>SPBC11G11.02c |end3||actin cortical patch component End3
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 375

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 39 AYNYNFETSNGIVRSETGELKEALDDDNKPHVIVA 73
          A    F+  NG+ ++    + EAL   +K H++ A
Sbjct: 65 AMKITFDLINGVYKTVPDRVPEALVSTSKKHLVAA 99


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 3/39 (7%)

Query: 58  LKEALDDDNKPHVIVAVRGSYSYTNTDGKPETITYFADE 96
           +K  +DDD+   ++  +R  YS+   +  PE  T F D+
Sbjct: 605 VKYTIDDDSVERIMNCIRAIYSF---EELPEFQTVFLDD 640


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 11/18 (61%), Positives = 12/18 (66%)

Query: 44  FETSNGIVRSETGELKEA 61
           F T  GI R +TGEL EA
Sbjct: 398 FRTKLGIARLKTGELPEA 415


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 52  RSETGELKEALDDDNKPHVIVAV-RGSYSYTNTD-GKPET 89
           +S+ GE KE+ D++NK  +   V       TN D GK ET
Sbjct: 417 KSDVGEEKESKDENNKASLHKDVEEKDTKITNEDTGKTET 456


>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 409

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 2/23 (8%)

Query: 41  NYNFETSNGIVRSETGELKEALD 63
           N+NFE  N + ++ET  ++E LD
Sbjct: 82  NFNFEPKNSVNKTET--IREELD 102


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1316

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 19   PPTEDYPKIVRSEFDASPDGAYNYNFE 45
            PP +D+P +    F+   +  YNY  E
Sbjct: 1255 PPVKDFPTLEFGSFEKIYNVGYNYGKE 1281


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 60  EALDDDNKPHVIVAVRGSYSYTN 82
           E L  +NKP   V V   Y+++N
Sbjct: 462 ENLSSNNKPQEYVGVENDYNFSN 484


>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 19  PPTEDYPKIVRSEFDASPDGAYNYNFETSNGIVRSETGELKEALDDDNK 67
           P  ED   I   +  A PDG    N ET     RS + + K+ L+   K
Sbjct: 107 PEKEDLAVIESEDKAAKPDGEIKKNVET-EVTSRSTSSQEKDELEKQVK 154


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.307    0.128    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 522,825
Number of Sequences: 5004
Number of extensions: 21210
Number of successful extensions: 44
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 36
Number of HSP's gapped (non-prelim): 13
length of query: 114
length of database: 2,362,478
effective HSP length: 64
effective length of query: 50
effective length of database: 2,042,222
effective search space: 102111100
effective search space used: 102111100
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 48 (23.4 bits)