GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000324-TA|BGIBMGA000324-PA|IPR000618|Insect cuticle
protein
         (114 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0496 + 22728097-22728401,22728506-22728670,22728771-22729041     28   2.0  
11_06_0015 + 19281918-19282043,19282263-19282365,19282514-192825...    27   4.7  
02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797     26   6.2  
02_05_0381 - 28483425-28483458,28483588-28483658,28483746-284838...    26   8.2  
02_05_0061 + 25506648-25509399,25509564-25509901,25510392-255105...    26   8.2  

>01_05_0496 + 22728097-22728401,22728506-22728670,22728771-22729041
          Length = 246

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 5/50 (10%)

Query: 63  DDDNKPHVIVAVRGSYSYTNTDGKPETITYFADETGYHAQGESIPQVASA 112
           DDD+   V  AV    S+   D     + Y+  E G+H++  + P VA+A
Sbjct: 34  DDDDMAAVADAVSSYLSFDMDD-----VEYYTPEVGFHSKQHNPPPVAAA 78


>11_06_0015 +
           19281918-19282043,19282263-19282365,19282514-19282581,
           19282687-19282842,19282950-19283078,19283161-19283278,
           19283368-19283462,19283579-19283731,19283822-19283917,
           19284095-19284196
          Length = 381

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 5/73 (6%)

Query: 24  YPKIVRSEFDASPDGAYNYNFETSNGIVRSETGELKEALDDDNKPHVIVAVRGSYSYTNT 83
           + +I+  EF    D   +  FE  N     +   L+  + DD   HVI+ +  +  + + 
Sbjct: 60  HERIILPEFPYLTDENGDIYFEVDN-----DDALLESIMGDDKTAHVIIGLDNTQVFADL 114

Query: 84  DGKPETITYFADE 96
           D    + T FA E
Sbjct: 115 DLAAASATEFAQE 127


>02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797
          Length = 518

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 52  RSETGELKEALDDDNKPHVIVAVRGSYSYTNTDG 85
           R E+G L+  L  + +PH+++AV  +  Y  T G
Sbjct: 274 RYESGALRRLLRREYRPHLVMAVLITVFYEMTGG 307


>02_05_0381 -
          28483425-28483458,28483588-28483658,28483746-28483819,
          28483975-28484050,28484129-28484206,28485557-28485589
          Length = 121

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 19 PPTEDYPKIVRSEFDASPD 37
          PP +DY K++  ++DAS D
Sbjct: 8  PPHKDYYKVLEVDYDASDD 26


>02_05_0061 +
           25506648-25509399,25509564-25509901,25510392-25510593,
           25510779-25510854,25512036-25512294
          Length = 1208

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/37 (32%), Positives = 17/37 (45%)

Query: 69  HVIVAVRGSYSYTNTDGKPETITYFADETGYHAQGES 105
           H +     + SY N DG+      FA+ TG   QG +
Sbjct: 614 HFLTLYDLNLSYNNFDGEVPVFGVFANATGISVQGNN 650


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.307    0.128    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,311,062
Number of Sequences: 37544
Number of extensions: 127793
Number of successful extensions: 201
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 198
Number of HSP's gapped (non-prelim): 5
length of query: 114
length of database: 14,793,348
effective HSP length: 73
effective length of query: 41
effective length of database: 12,052,636
effective search space: 494158076
effective search space used: 494158076
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 54 (25.8 bits)