GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000324-TA|BGIBMGA000324-PA|IPR000618|Insect cuticle
protein
         (114 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82084-6|CAJ85781.1|  156|Caenorhabditis elegans Hypothetical pr...    27   2.4  
AC025726-36|AAL27268.1|  487|Caenorhabditis elegans Hypothetical...    27   4.2  
AC025726-35|AAL27267.1|  489|Caenorhabditis elegans Hypothetical...    27   4.2  
Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical pr...    26   5.6  
U61949-4|AAB03150.2|  414|Caenorhabditis elegans Hypothetical pr...    26   7.4  
Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z72502-9|CAD44097.1|  374|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>Z82084-6|CAJ85781.1|  156|Caenorhabditis elegans Hypothetical
           protein ZK1053.7 protein.
          Length = 156

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 74  VRGSYSYTNTDGKPETITYF 93
           ++ +YSY N DG P + TY+
Sbjct: 112 IKDTYSYDNVDGTPISCTYY 131


>AC025726-36|AAL27268.1|  487|Caenorhabditis elegans Hypothetical
           protein Y71G12B.1b protein.
          Length = 487

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 43  NFETSNGIVRSETGELKEALDDDNKPHVIVAVRGS 77
           NF + NG+    +G+    +  D K  +I AVRG+
Sbjct: 174 NFRSPNGVCWDPSGKYIATMSPDRKMDLIDAVRGA 208


>AC025726-35|AAL27267.1|  489|Caenorhabditis elegans Hypothetical
           protein Y71G12B.1a protein.
          Length = 489

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 43  NFETSNGIVRSETGELKEALDDDNKPHVIVAVRGS 77
           NF + NG+    +G+    +  D K  +I AVRG+
Sbjct: 176 NFRSPNGVCWDPSGKYIATMSPDRKMDLIDAVRGA 210


>Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical
           protein C27A7.4 protein.
          Length = 1403

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 46  TSNGIVRSETGELKEALDDDNKPHVIVAVRGSYSY----TNTDGKPETITYFAD 95
           T+NG +R      K+A  + N  ++I  V+  Y +     N  G    ++Y  D
Sbjct: 485 TTNGFIRIYNLSAKDAQQEHNSKYIIENVKNFYKFHTIRINHTGNKVAVSYLED 538


>U61949-4|AAB03150.2|  414|Caenorhabditis elegans Hypothetical
           protein F49E8.2 protein.
          Length = 414

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 23  DYPKIVRSEFDASPDGAYNYNFETSNGIVRSETGELKEALD 63
           DY      +   S +GA + + +T N +  SE G L+  +D
Sbjct: 372 DYDIFDNQDETDSEEGARSESIDTGNKVSESEPGSLQSVID 412


>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical protein
            ZC116.3 protein.
          Length = 3871

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 1/81 (1%)

Query: 24   YPKIVRSEFDASPDGA-YNYNFETSNGIVRSETGELKEALDDDNKPHVIVAVRGSYSYTN 82
            +P +   E     DGA Y+  F  +   + S T  ++   DD +   +I A+       +
Sbjct: 2655 FPDVAVVEGFPPYDGAQYSTYFCKNETQITSITDTIRIVYDDSHTREMISAIGNDQPLNS 2714

Query: 83   TDGKPETITYFADETGYHAQG 103
            T   P TI Y A       QG
Sbjct: 2715 TFYAPFTIDYMAIPANSENQG 2735


>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical protein
            ZC116.3 protein.
          Length = 3871

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 1/81 (1%)

Query: 24   YPKIVRSEFDASPDGA-YNYNFETSNGIVRSETGELKEALDDDNKPHVIVAVRGSYSYTN 82
            +P +   E     DGA Y+  F  +   + S T  ++   DD +   +I A+       +
Sbjct: 2655 FPDVAVVEGFPPYDGAQYSTYFCKNETQITSITDTIRIVYDDSHTREMISAIGNDQPLNS 2714

Query: 83   TDGKPETITYFADETGYHAQG 103
            T   P TI Y A       QG
Sbjct: 2715 TFYAPFTIDYMAIPANSENQG 2735


>Z72502-9|CAD44097.1|  374|Caenorhabditis elegans Hypothetical
           protein C08B6.11 protein.
          Length = 374

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 31  EFDASPDGAYNYNFETSNGI--VRSETGELKEALDDDNKP 68
           E +  P+   NYN E  N      +E  EL E + D+ KP
Sbjct: 267 EIELLPEHNNNYNGEPENNSSNTNNEVNELLEVVRDEMKP 306


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.307    0.128    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,858,016
Number of Sequences: 27539
Number of extensions: 115295
Number of successful extensions: 234
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 230
Number of HSP's gapped (non-prelim): 8
length of query: 114
length of database: 12,573,161
effective HSP length: 72
effective length of query: 42
effective length of database: 10,590,353
effective search space: 444794826
effective search space used: 444794826
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 53 (25.4 bits)