GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000324-TA|BGIBMGA000324-PA|IPR000618|Insect cuticle
protein
         (114 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    66   1e-13
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   0.51 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   8.3  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    20   8.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   8.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   8.3  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 65.7 bits (153), Expect = 1e-13
 Identities = 36/81 (44%), Positives = 48/81 (59%), Gaps = 5/81 (6%)

Query: 27  IVRSEFDASPDGAYNYNFETSNGIVRSETGELKEALDDDNKPHVIVAVRGSYSYTNTDGK 86
           I   + + + DG Y  NFETSNGI   E+G+ K+    DN+  V+   +GS SYT  DG+
Sbjct: 29  ITSQQLEVNFDGNYINNFETSNGISHQESGQPKQV---DNETPVVS--QGSDSYTAPDGQ 83

Query: 87  PETITYFADETGYHAQGESIP 107
             +ITY ADE G+  QG  IP
Sbjct: 84  QVSITYVADENGFQVQGSHIP 104


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 0.51
 Identities = 10/17 (58%), Positives = 12/17 (70%)

Query: 46  TSNGIVRSETGELKEAL 62
           TS G  R  TGE+KEA+
Sbjct: 403 TSKGEYRMSTGEMKEAI 419


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 6/16 (37%), Positives = 9/16 (56%)

Query: 88  ETITYFADETGYHAQG 103
           E +  F D+ G+H  G
Sbjct: 195 EEVNIFLDKKGFHMDG 210


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 13/55 (23%), Positives = 21/55 (38%)

Query: 37  DGAYNYNFETSNGIVRSETGELKEALDDDNKPHVIVAVRGSYSYTNTDGKPETIT 91
           D   + + ET++    +     K +L DD    V +   G+ S   T G     T
Sbjct: 249 DAEESVSSETNHNERSTPRSHAKPSLIDDEPTEVTIGGGGTTSSRRTTGSRAAAT 303


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 84   DGKPETITYFADETGYHAQGESIPQVASA 112
            DG P T+TY   E         I  V S+
Sbjct: 1198 DGVPTTVTYCQTEEDVPGSPADIKVVVSS 1226


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 84   DGKPETITYFADETGYHAQGESIPQVASA 112
            DG P T+TY   E         I  V S+
Sbjct: 1194 DGVPTTVTYCQTEEDVPGSPADIKVVVSS 1222


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.307    0.128    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,530
Number of Sequences: 429
Number of extensions: 1275
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 114
length of database: 140,377
effective HSP length: 50
effective length of query: 64
effective length of database: 118,927
effective search space:  7611328
effective search space used:  7611328
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.2 bits)
S2: 39 (19.8 bits)