GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000324-TA|BGIBMGA000324-PA|IPR000618|Insect cuticle
protein
         (114 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa...    28   1.7  
At1g48120.1 68414.m05370 calcineurin-like phosphoesterase family...    27   2.3  
At1g18990.1 68414.m02362 expressed protein contains Pfam profile...    27   2.3  
At4g21750.1 68417.m03148 L1 specific homeobox gene (ML1) / ovule...    26   7.0  
At3g27320.1 68416.m03414 expressed protein low similarity to PrM...    26   7.0  

>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
            protein contains Pfam profile: PF00097 zinc finger, C3HC4
            type (RING finger)
          Length = 4706

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 76   GSYSYTNTDGKPETITYFADETGYHAQGESIP 107
            GS++  N +G  E I +FA+E GY    +S+P
Sbjct: 1985 GSFTTFNKNGTAERI-FFAEEIGYELLKDSLP 2015


>At1g48120.1 68414.m05370 calcineurin-like phosphoesterase family
            protein contains Pfam profile: PF00149 calcineurin-like
            phosphoesterase
          Length = 1338

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 41   NYNFETSNGIVR---SETGELKEALDDD-NKPHVIVAVRGSYSYTNTDGKPETIT 91
            +++ +T NG      SET E+ + L D   KP      RG+Y    TD K ++ T
Sbjct: 1053 DFSDKTENGSKEADHSETAEISKDLSDTVGKPESCSRTRGTYEAIGTDAKLKSNT 1107


>At1g18990.1 68414.m02362 expressed protein contains Pfam profile
           PF04576: Protein of unknown function, DUF593
          Length = 524

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)

Query: 49  GIVRSETGELKEALDDDNKP 68
           G++R E GE +E LD++ KP
Sbjct: 401 GLLREERGEAEEFLDEETKP 420


>At4g21750.1 68417.m03148 L1 specific homeobox gene (ML1) /
          ovule-specific homeobox protein A20 nearly identical to
          meristem L1 layer homeobox protein A20 (AtML1)
          [Arabidopsis thaliana] GI:1881536, protodermal factor2
          (PDF2) [Arabidopsis thaliana] GI:14276060
          Length = 762

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 30 SEFDASPDGAYNYNFETSNGIVRSETGELKEALDDDNK 67
          SE D    G++  +FET +G   +    L+E L D N+
Sbjct: 21 SENDLGITGSHEEDFETKSGAEVTMENPLEEELQDPNQ 58


>At3g27320.1 68416.m03414 expressed protein low similarity to PrMC3
           [Pinus radiata] GI:5487873
          Length = 460

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 40  YNYNFETSNGIVRSETGELKEALDDDNK--PHVIVAVRGSYSYTNTDGKPE 88
           Y+    T N I  S+    + +L   N    H + + R SY YT     PE
Sbjct: 94  YSGKARTLNNIAGSDLLSRRNSLGSSNSLLSHKVESRRNSYGYTTGSSSPE 144


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.307    0.128    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,691,810
Number of Sequences: 28952
Number of extensions: 108296
Number of successful extensions: 203
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 201
Number of HSP's gapped (non-prelim): 5
length of query: 114
length of database: 12,070,560
effective HSP length: 72
effective length of query: 42
effective length of database: 9,986,016
effective search space: 419412672
effective search space used: 419412672
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 53 (25.4 bits)