Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000323-TA|BGIBMGA000323-PA|IPR010748|Origin recognition
complex subunit 3, N-terminal
(518 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ... 47 7e-06
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 32 0.22
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 31 0.29
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 29 1.6
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch... 28 2.7
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces... 27 4.8
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 27 4.8
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 27 8.3
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 27 8.3
>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 46.8 bits (106), Expect = 7e-06
Identities = 37/170 (21%), Positives = 81/170 (47%), Gaps = 12/170 (7%)
Query: 30 VIVIPDFESFNCHLLQDFVMIISSYI--SSLP--IVLVFGVATSVSALHKSFPYEVSSKL 85
V+V+ D E + LL V +SS + S L + +F + + S + S +
Sbjct: 167 VLVLEDVEDCDRRLLSSLVEALSSLVRHSKLQGCLYTIFNLKIPLEMFDTSLDSKFLSNV 226
Query: 86 LIKVFHSHSSAVYMNQVLEDIF--LTHTVPFHLSGKAFELLTDVFLFYDFSVKGLVQSIK 143
KVF+ +S ++LE +F + ++ + +F +SV+ +++ I+
Sbjct: 227 KTKVFNMKAST----EILESLFTSIEESLSLKFGWRTRRFFRSMFYERSWSVERVIECIR 282
Query: 144 YCMMDHFYGDNTKVLCCKREDLEEAILNLSPNDLESIRQLKSFRPYLEKQ 193
Y ++ HFYG+ ++ + ++ +SP L ++R + SF+ ++E++
Sbjct: 283 YSILTHFYGNALSII--EHLIYQKDFHLISPLHLTTLRTVPSFQRHIEQR 330
Score = 45.6 bits (103), Expect = 2e-05
Identities = 38/163 (23%), Positives = 76/163 (46%), Gaps = 17/163 (10%)
Query: 366 VENVPGSRYKLKEKLLKATRVEKIQSEFEMIRCRFISYLEEMF---AKGLQPPHTQTFHE 422
++N G+++ K + + +K +F I + + L+E G + F+E
Sbjct: 471 MQNYSGTKHTRK---VVESGFDKSIIDFSKILKKIVGLLDEEVQYGCLGTESIDMYPFYE 527
Query: 423 IMFFSDISNVKKHIV-GAPRGALHTALSDPAHYL--------QCSCCRLPSPESVAGTLP 473
++F+ + + G R +H++ DP +Y+ + S + ++ LP
Sbjct: 528 VLFYDYCRPLNQAFASGHQRSVIHSSCMDPEYYVGDEKKIDSEFSNAEKDGKDLISW-LP 586
Query: 474 DVCLAYKLHRECGKHINLYDWLQAFAAVVKPG-ENDEQRHHDP 515
D+ + YKL+ E G +NLYDW AF+ ++ G EN ++ + P
Sbjct: 587 DLSILYKLYSESGALLNLYDWYIAFSEHLQAGKENLKEDDNHP 629
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 31.9 bits (69), Expect = 0.22
Identities = 38/172 (22%), Positives = 72/172 (41%), Gaps = 10/172 (5%)
Query: 268 KECMQL-LSFQSQIKIVDTITGALKLLNSHLQSVSPIKPLQATPKKNNNNTDKVFAHREL 326
KE +L Q K DT + LN ++++ + + N NT A E
Sbjct: 1366 KEKQELETKLQETAKETDTFKQQVNSLNEEVENLK-----KEVEQANTKNTRLAAAWNEK 1420
Query: 327 GESFAKTVRVHLMTFLRQLENANTEASISTAMDTDTNDNVENVPGSRYKLKEKLLKATRV 386
E+ K+ ++L N N E + A + +E++ S ++L+E ++
Sbjct: 1421 CENLKKSSLTRFAHLKQELTNKNKELTSKNAENEAMQKEIESLKDSNHQLQES--ASSDA 1478
Query: 387 EKIQSE-FEMIRCRFISYLEEMFAKGLQPPHTQT-FHEIMFFSDISNVKKHI 436
E+I E FE ++ +E+ + H Q+ + ++ISN++K I
Sbjct: 1479 EQITKEQFEQLKSEKERTEKELADSKNELEHLQSEAVDADGKTEISNLEKEI 1530
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 31.5 bits (68), Expect = 0.29
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 216 LMKLHDYLYSFYLCVKLLSTLIKDIPNNLLGKTVREVYTKCATECITDTPSFKECMQLLS 275
L+ +D +SF + ++T + ++PNN+ GK + + CI + KE +++
Sbjct: 245 LVLWNDEKHSFKQFYEQITTAL-ELPNNVFGKKMANIINDIGRACIVTETNIKELLKIGQ 303
Query: 276 FQSQIKIVDTI 286
+QI + +I
Sbjct: 304 KLAQINLAVSI 314
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 29.1 bits (62), Expect = 1.6
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 12/97 (12%)
Query: 163 EDLEEAILNLSPND-LESIRQLKS-FRPYLEKQDCRTKISLFEDD--QYFRDALYKELMK 218
+ L + +L++S N+ + +I +L S + + + TKI ++ + R+ L K+ MK
Sbjct: 455 KSLFQRLLSISLNENVRAIHKLISRYEARIVSPEILTKIQEQVENPCKAAREVLEKKQMK 514
Query: 219 LHDYLYSFYLCVKLLSTLIKDIPNNLLGKTVREVYTK 255
HDYLY F L + D+P L +R VY +
Sbjct: 515 RHDYLY-FIL-------ISDDVPPKLPDNLIRRVYAE 543
>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 28.3 bits (60), Expect = 2.7
Identities = 16/54 (29%), Positives = 23/54 (42%)
Query: 302 PIKPLQATPKKNNNNTDKVFAHRELGESFAKTVRVHLMTFLRQLENANTEASIS 355
P + KK N+ + V R+L F + H T + EN N E S+S
Sbjct: 666 PSSGIDTFSKKQFNSLESVPVQRDLSSPFYLSSNQHTTTTNSEPENLNVETSMS 719
>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 815
Score = 27.5 bits (58), Expect = 4.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 243 NLLGKTVREVYTKCATECITDT 264
+LL K +R V++ AT CI DT
Sbjct: 487 DLLPKRIRTVFSMAATRCIVDT 508
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 27.5 bits (58), Expect = 4.8
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 259 ECITDTPSFKECMQLLSFQSQIKIVDTIT-GALKLLNSHLQSVSPIKPLQATPKKN 313
EC D+PSF+ M L +QIK + + L N ++S+ I+P+ A+ N
Sbjct: 21 ECSIDSPSFRASMYYLG--NQIKAFNEWSHDFLCCCNKFIESIMAIEPIVASMSLN 74
>SPAP8A3.14c |||mitochondrial inner membrane protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 677
Score = 26.6 bits (56), Expect = 8.3
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 44 LQDFVMIISSYISSLPIVLVFGVATSVSALHKSFPYEVSSKLLIKVFHSHSSAVYMNQVL 103
L+D I SY V+ L +F E K KVFH SS++ +++
Sbjct: 89 LEDVFQDIESYKPKSVNTSAKSFRQLVNTLEVAFRKEQLRKFA-KVFHIKSSSLRKKEII 147
Query: 104 EDIFLTH 110
E I L H
Sbjct: 148 ERILLDH 154
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 120 AFELLTDVF-LFYDFSVKGLVQSIKYCMMD 148
A E L ++F LF+D + KG +++++ M+D
Sbjct: 140 AEEFLVNIFRLFFDLARKGTTKNVEFYMLD 169
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.323 0.136 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,404,253
Number of Sequences: 5004
Number of extensions: 104778
Number of successful extensions: 275
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 268
Number of HSP's gapped (non-prelim): 11
length of query: 518
length of database: 2,362,478
effective HSP length: 76
effective length of query: 442
effective length of database: 1,982,174
effective search space: 876120908
effective search space used: 876120908
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 56 (26.6 bits)
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