Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000323-TA|BGIBMGA000323-PA|IPR010748|Origin recognition
complex subunit 3, N-terminal
(518 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0124 - 13085820-13085997,13086235-13086362,13086475-130865... 58 2e-08
08_01_0343 - 3025577-3025810,3026428-3026505,3026630-3026748,302... 33 0.42
07_03_1180 - 24601631-24602142,24602518-24602581,24602811-246028... 33 0.42
08_01_1007 - 10201181-10201298,10202180-10202484,10202577-102027... 32 0.96
11_01_0689 - 5678227-5678343,5678475-5678636,5678751-5678846,567... 30 3.9
12_02_0388 - 18486957-18487016,18487286-18489418,18489985-184904... 30 5.1
07_01_0307 - 2194796-2199274 29 9.0
>10_07_0124 -
13085820-13085997,13086235-13086362,13086475-13086550,
13086726-13086803,13086985-13087064,13087411-13087480,
13087730-13087887,13088225-13088315,13088379-13088455,
13088612-13088686,13088798-13089071,13089911-13090041,
13090154-13090323,13090413-13090971,13091077-13091127
Length = 731
Score = 57.6 bits (133), Expect = 2e-08
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 404 LEEMFAKGLQPPHTQTFHEIMFFSDISNVKKHIVGAPRGALHTALSDPAHYLQCSCCRLP 463
L+++ K L FHEI+ F ++S ++ ++G PR + L +L+CSCCR
Sbjct: 600 LDDVTRKFLVSVECLPFHEIVCFKNVSILQSALIGNPRRMVQLDLVKSHKHLKCSCCR-K 658
Query: 464 SPESVAGTLPDVCLAYKLHRECGKHINLYDWLQAFAAVV 502
+ +V ++ D + L +E G INL+DW +F ++
Sbjct: 659 NGIAVLASMHDTSIMCNLAQEYGDVINLHDWYISFDGII 697
Score = 56.4 bits (130), Expect = 5e-08
Identities = 34/131 (25%), Positives = 62/131 (47%)
Query: 29 LVIVIPDFESFNCHLLQDFVMIISSYISSLPIVLVFGVATSVSALHKSFPYEVSSKLLIK 88
+V+VI D E + +L + VM++S ++ +PI V G+AT++ A K E +L
Sbjct: 281 IVVVIDDLEQCSGDVLGELVMMLSEWVIKIPIFFVMGIATTLDAPRKLLSSEDLQRLEPC 340
Query: 89 VFHSHSSAVYMNQVLEDIFLTHTVPFHLSGKAFELLTDVFLFYDFSVKGLVQSIKYCMMD 148
S + MN ++E I + F +S + L + F +D ++ + ++K
Sbjct: 341 KLTLGSPSDRMNALVEAILVKPCAGFCISHEVAVFLRNYFFKHDGTITSFISALKLACSK 400
Query: 149 HFYGDNTKVLC 159
HF + LC
Sbjct: 401 HFSVEPLSFLC 411
>08_01_0343 - 3025577-3025810,3026428-3026505,3026630-3026748,
3027566-3027645,3028034-3028107,3028536-3028620,
3028704-3028789,3028968-3029038,3029126-3029207,
3029490-3029531,3029552-3029584,3029699-3029794,
3030163-3030414,3030970-3031149,3032079-3032119,
3032341-3032470,3032504-3032606,3032686-3032773,
3033151-3033304,3033688-3033739,3033815-3033894,
3034478-3034789,3034886-3034955,3035033-3035100,
3035405-3035678,3036408-3036580,3037036-3037128,
3037228-3037443
Length = 1121
Score = 33.5 bits (73), Expect = 0.42
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 165 LEEAILNLSPNDLESIRQLKSFRPYLEKQDCRTKISLF-----EDDQYFRDALYKELMKL 219
+E + +LS N L S K + LEKQ T + LF +DDQ RD L K+ L
Sbjct: 991 IEHVLESLSSNSLSSPSNFKH-KGNLEKQVTFTALHLFSFVSPKDDQSLRDFLIKKASFL 1049
Query: 220 HDYLYSFY 227
D+L S +
Sbjct: 1050 EDWLKSLF 1057
>07_03_1180 -
24601631-24602142,24602518-24602581,24602811-24602876,
24602949-24603070,24603170-24603344,24603466-24603701,
24603781-24604129,24605009-24605146,24605242-24605289
Length = 569
Score = 33.5 bits (73), Expect = 0.42
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
Query: 306 LQATPKKNNNNTDKVFAHRELGESFAKTV--RVHLMTFLRQLE---NANTEASISTAMDT 360
LQ T N++ + E+ +S V H +TF + E N N A +
Sbjct: 137 LQETLLTETNDSPQERLLTEINDSLPNHVDDNTHSVTFTSEPETSGNVNETADLELPSAE 196
Query: 361 DTNDNVENVPGSRYKLKEKLLKATRVEKIQSEFEMI 396
+ NDNVEN+P + +E +L E + S E I
Sbjct: 197 NVNDNVENLPANDSSPEENVLVEACTEVVSSCAENI 232
>08_01_1007 -
10201181-10201298,10202180-10202484,10202577-10202726,
10202954-10202956
Length = 191
Score = 32.3 bits (70), Expect = 0.96
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 158 LCCKREDLEEAILNLSPNDLESIRQLKS---FRPYLEKQDCRTKISLFEDDQYFRDALYK 214
+ CK E+L EA LN+ L S+ + S F P++E + +T + + ++ D+L
Sbjct: 10 ITCKFENLREASLNIDFGQLSSVLSIDSLLKFAPHIEHLEIQTLDTELDKEKIDEDSLNS 69
Query: 215 EL 216
E+
Sbjct: 70 EI 71
>11_01_0689 -
5678227-5678343,5678475-5678636,5678751-5678846,
5679345-5679406,5679648-5679723,5679847-5679929,
5680525-5680853,5681402-5681448,5681707-5681843,
5682093-5682126
Length = 380
Score = 30.3 bits (65), Expect = 3.9
Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 97 VYMNQVLE-DIFLTHTVPFHLSGKAFELL 124
+YMN+ LE + F+TH+VPF AF+L+
Sbjct: 338 MYMNKELELEKFITHSVPFSEINTAFDLM 366
>12_02_0388 -
18486957-18487016,18487286-18489418,18489985-18490484,
18490728-18490899
Length = 954
Score = 29.9 bits (64), Expect = 5.1
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 232 LLSTLIKDIPNNLLGKTVR-EVYTKCATECITDTPSFKECMQLLSFQSQIKIVDTITGAL 290
L S I++IP +L K R +V C+ + + SF+ L + +K + G +
Sbjct: 612 LRSNPIREIPEVILSKLSRLQVADFCSLQ-LEQPASFEPPFGALECMTDLKALGITVGKI 670
Query: 291 KLLNSHLQSVSPIKPLQATPKKNNNNTDKVFA 322
K LN ++ P++ L K + + K FA
Sbjct: 671 KYLNMLCKTSLPVRSLCVIIKSKSLDEWKRFA 702
>07_01_0307 - 2194796-2199274
Length = 1492
Score = 29.1 bits (62), Expect = 9.0
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 364 DNVENVPGSRYKLKEKLLKATRVEKIQSEFEMIRCRFISYLEEMFAKGLQP 414
DN+E V + KLL TR+ K++ ++ R ++ E+ + LQP
Sbjct: 805 DNLEKVHTKEEAAEAKLLSKTRLRKLELNWKQGRTSTNAFNEDQILEKLQP 855
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.323 0.136 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,887,788
Number of Sequences: 37544
Number of extensions: 557416
Number of successful extensions: 1229
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1221
Number of HSP's gapped (non-prelim): 9
length of query: 518
length of database: 14,793,348
effective HSP length: 85
effective length of query: 433
effective length of database: 11,602,108
effective search space: 5023712764
effective search space used: 5023712764
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 62 (29.1 bits)
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