Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000323-TA|BGIBMGA000323-PA|IPR010748|Origin recognition
complex subunit 3, N-terminal
(518 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12833| Best HMM Match : No HMM Matches (HMM E-Value=.) 144 1e-34
SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.045
SB_37853| Best HMM Match : REJ (HMM E-Value=0.00025) 32 1.3
SB_25397| Best HMM Match : zf-C2H2 (HMM E-Value=0.38) 30 5.2
SB_52593| Best HMM Match : Baculo_PEP_C (HMM E-Value=6.1) 29 6.9
SB_24498| Best HMM Match : Galactosyl_T_2 (HMM E-Value=0) 29 6.9
SB_8915| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.9
SB_40210| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.9
>SB_12833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 498
Score = 144 bits (350), Expect = 1e-34
Identities = 87/297 (29%), Positives = 152/297 (51%), Gaps = 26/297 (8%)
Query: 209 RDALYKELMKLHDYLYSFYLCVKLLSTLIKDIPNNLLGKTVREVYTKCATEC-ITDTPSF 267
++ + + L L Y + F+ + L + ++P LGK VR++Y + I +
Sbjct: 204 QEVIIELLNGLDSYHWYFFPILDCLHAMAANLPRLPLGKKVRDLYEYSLSPTHIYHQDKY 263
Query: 268 KECMQLLSFQSQIKIVDTITGALKLLNSHLQSVSPIKPLQATPKKNNNNTDKVFAHRELG 327
++ + LL ++ ++V+ I + +L L++ + A L
Sbjct: 264 RDALALLRVLAKDELVELIIKCVNILEKFLETA-------------------LNAKSSLS 304
Query: 328 ESFAKTVRVHLMTFLRQLENANTEASISTAMDTDTNDNVENVPGSRYKLKEKLLKATRVE 387
E F V VH+ + + E + T + V +R++L+EKL A +
Sbjct: 305 E-FINVVVVHIK--IPTIVTEQQEPVRPATLPTGKGGTPKIV--NRFELQEKLRLAATQK 359
Query: 388 KIQSEFEMIRCRFISYLEEMFAKGLQPPHTQTFHEIMFFSDISNVKKHIVGAPRGALHTA 447
+ + ++ +R + + Y++ +F K L+ P + HE+M+F + VK+H++G PR A+ TA
Sbjct: 360 RKDTPYDQLRQKTVDYMDSLFRKHLRSPQSLPLHEVMYFDKLHKVKEHLIGMPRAAIQTA 419
Query: 448 LSDPAHYLQCSCCRLPSPESVAGTLPDVCLAYKLHRECGKHINLYDWLQAFAAVVKP 504
LSDP HYL+C CC + + ++ +LPDV +AYKLH EC + INLYDWLQAF V+ P
Sbjct: 420 LSDPRHYLKCECCEIEA-GAIQDSLPDVSVAYKLHLECSRMINLYDWLQAFKVVLDP 475
Score = 106 bits (254), Expect = 5e-23
Identities = 49/124 (39%), Positives = 76/124 (61%)
Query: 29 LVIVIPDFESFNCHLLQDFVMIISSYISSLPIVLVFGVATSVSALHKSFPYEVSSKLLIK 88
+VI+ DFE F H++QDF+ I S Y LP+VLVFGVATSV+A+H+ P+ VS+ L I+
Sbjct: 90 MVIIFEDFEGFPAHIVQDFITICSQYADHLPLVLVFGVATSVAAIHQVLPHSVSTLLSIQ 149
Query: 89 VFHSHSSAVYMNQVLEDIFLTHTVPFHLSGKAFELLTDVFLFYDFSVKGLVQSIKYCMMD 148
F S S V + +++ + +T F L K F L + FLF+DFS++ ++ +++
Sbjct: 150 RFQSQPSLVCLQEIISQVLMTPKYSFKLGAKVFRFLYENFLFHDFSLQNFSTGLQEVIIE 209
Query: 149 HFYG 152
G
Sbjct: 210 LLNG 213
>SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1805
Score = 36.7 bits (81), Expect = 0.045
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 5/97 (5%)
Query: 342 LRQLENANTEASISTAMDTDTNDNVENVPGSRYKLKEKL-LKATRVEKIQSEFEMIRCRF 400
++ LEN +EA+I A D V + SR +L++ L ++ + VE ++S+ + R
Sbjct: 1179 IKMLENQMSEANIRLA---DDEQKVSELTISRNQLQKDLEVQISMVESLESKHTALE-RS 1234
Query: 401 ISYLEEMFAKGLQPPHTQTFHEIMFFSDISNVKKHIV 437
LE+ A+ +T H++M S + +V+ IV
Sbjct: 1235 KKSLEDTLAETQDSLQEETHHKLMIISKLKDVENEIV 1271
>SB_37853| Best HMM Match : REJ (HMM E-Value=0.00025)
Length = 2182
Score = 31.9 bits (69), Expect = 1.3
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 213 YKELMKLHDYLYSFYLCVKLLS-TLIKDIPNNLLGKTVREVYTKCATECITDTPSFKECM 271
Y++L++++ VK + T I L + K A EC+T T K+
Sbjct: 1569 YEKLLEINTLDDDMLETVKQMRRTATNQITKRFLSSPSDDETQKSALECLTKTLKGKQAS 1628
Query: 272 QLLSFQSQIKIVDTITGALK 291
+ LS + +++D++ A+K
Sbjct: 1629 EFLSMDEEEQLIDSVFNAVK 1648
>SB_25397| Best HMM Match : zf-C2H2 (HMM E-Value=0.38)
Length = 283
Score = 29.9 bits (64), Expect = 5.2
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 343 RQLENANTEASISTAMDTDTNDNVENVPGSRYKLKEKLLKATR 385
R+ + N+E S +D NDN +N ++LKEK TR
Sbjct: 161 RKDDGVNSELSDEGDLDRVLNDNDDNATADSFELKEKAKTKTR 203
>SB_52593| Best HMM Match : Baculo_PEP_C (HMM E-Value=6.1)
Length = 552
Score = 29.5 bits (63), Expect = 6.9
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 273 LLSFQSQIKIVDTITGALKLLNSHLQSVSPIKPLQATPKKNNNNTDKV 320
L SF S +K+++ T +KLLN +V + P+ + K N T V
Sbjct: 155 LNSFTSYVKVLNPYTSYVKLLNPVTSNVKVLNPVTSNVKVLNPVTSNV 202
>SB_24498| Best HMM Match : Galactosyl_T_2 (HMM E-Value=0)
Length = 446
Score = 29.5 bits (63), Expect = 6.9
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 318 DKVFAHRELGESFAKTVRVHLMTFLRQLENANTEASISTAMDTDTNDNVENVPGSRYKLK 377
DK+ +L + L +L +++N+N+E + T + N ++NV S +
Sbjct: 65 DKISKGEDLNSIKNQVSNEILGEYLAKIKNSNSEGASKTDAEDGKNSTIKNVLKSTEPSE 124
Query: 378 EKLLKATR--VEKIQSE 392
EK +K ++ E++ SE
Sbjct: 125 EKNIKQSKKPPEELSSE 141
>SB_8915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 482
Score = 29.5 bits (63), Expect = 6.9
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 35 DFESFNCHLLQDFVMIISSYISSLPIVLVFGVATSVSALHKSFPYEVSSKLLIKVFHS 92
D ES N + F I +Y+ S + VAT VS +K FPY++S L+ H+
Sbjct: 196 DNESDNVQWIAGFN--IDNYLKSRFWNITHRVATHVSGSNKWFPYDISCNLIRYADHT 251
>SB_40210| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 29.5 bits (63), Expect = 6.9
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 45 QDFVMIISSYISSLPIVLVFGVATSVSALHKSFPYEVSSKLLIKVF--HSHSSAVY 98
+D + +++ S+ I +FG++ S A++K F SS + K+F + S A+Y
Sbjct: 16 EDALNYVAAGASTGAIYKLFGISASTGAIYKLFGISASSGAIYKLFGISASSGAIY 71
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.323 0.136 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,794,889
Number of Sequences: 59808
Number of extensions: 697296
Number of successful extensions: 1595
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1550
Number of HSP's gapped (non-prelim): 48
length of query: 518
length of database: 16,821,457
effective HSP length: 85
effective length of query: 433
effective length of database: 11,737,777
effective search space: 5082457441
effective search space used: 5082457441
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 62 (29.1 bits)
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