GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000323-TA|BGIBMGA000323-PA|IPR010748|Origin recognition
complex subunit 3, N-terminal
         (518 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles ...    25   6.5  
AY578811-1|AAT07316.1|  565|Anopheles gambiae thickveins protein.      24   8.6  

>M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 442

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 445 HTALSDPAHYLQCSCCRLPSPESVAGTLPDVCLAYKLHREC 485
           H+++   +  +QCS C  P+  + + +   VC   K H  C
Sbjct: 25  HSSVCAVSFVMQCSTCNAPTDSANSVSCAGVC-GSKHHTHC 64


>AY578811-1|AAT07316.1|  565|Anopheles gambiae thickveins protein.
          Length = 565

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 213 YKELMKLHDYLYSFYLCVKLLSTLIKDIPNNL 244
           Y EL  LHDYL    L   +L TL   + + +
Sbjct: 336 YHELGSLHDYLQKRVLNPHMLKTLAHSLASGV 367


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.323    0.136    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 521,119
Number of Sequences: 2123
Number of extensions: 21835
Number of successful extensions: 30
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 2
length of query: 518
length of database: 516,269
effective HSP length: 67
effective length of query: 451
effective length of database: 374,028
effective search space: 168686628
effective search space used: 168686628
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 50 (24.2 bits)