GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000323-TA|BGIBMGA000323-PA|IPR010748|Origin recognition
complex subunit 3, N-terminal
         (518 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021493-7|CAA16394.2|  781|Caenorhabditis elegans Hypothetical ...    33   0.49 
Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical pr...    31   2.6  
Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical pr...    31   2.6  
U39849-1|AAA81045.2|  332|Caenorhabditis elegans Serpentine rece...    30   3.4  
Z82278-6|CAB05258.1|  690|Caenorhabditis elegans Hypothetical pr...    30   4.5  
Z74041-1|CAA98520.1|  255|Caenorhabditis elegans Hypothetical pr...    30   4.5  
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ...    29   7.9  

>AL021493-7|CAA16394.2|  781|Caenorhabditis elegans Hypothetical
           protein Y51A2B.6 protein.
          Length = 781

 Score = 33.1 bits (72), Expect = 0.49
 Identities = 45/210 (21%), Positives = 92/210 (43%), Gaps = 15/210 (7%)

Query: 161 KREDLEEAILNLSP--NDLESI-RQLKSFRPY-LEKQDCRTKIS-LFEDDQYFRDALYKE 215
           K +DL   +++LS   N  + + R++    P  L+K   R K+  + E+ Q    + Y++
Sbjct: 452 KVQDLFNVLVDLSSIENKFKKLKRKVMLLSPINLDKHLIRVKVEGILEELQQLTLSYYEK 511

Query: 216 LMKLHDYLYSFYLCVKLLSTLIKDIPNNLLGKTVREVYT-KCATECITDTPSFKECMQLL 274
           L+    Y        KLL  LI         K   E+   KC  +   D+  F++ +Q++
Sbjct: 512 LLPFQPYRKY----KKLLKKLING-RKEFADKVDNELSVIKCLQQLKQDSEHFQKVIQVI 566

Query: 275 SFQSQIK--IVDTITGALKLLNSHLQSVSPIKPLQATPKKNNNNTDKVFAHRELGESFAK 332
                +    V  I G   +++  L++++ ++ +    K+N+NN  K F    L  + + 
Sbjct: 567 QKMRNLDKDSVQNIQGIPSVVSEFLKNLAKVREISDKMKENSNN--KTFVMNALSFNKSD 624

Query: 333 TVRVHLMTFLRQLENANTEASISTAMDTDT 362
           +++  + +        + EA I+   + DT
Sbjct: 625 SIKSIVSSVQNVYGLLDLEAPINLLKNVDT 654


>Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical
           protein F59A2.6 protein.
          Length = 1133

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 44/232 (18%), Positives = 93/232 (40%), Gaps = 6/232 (2%)

Query: 170 LNLSPNDLESIRQLKSFRPYLEKQDCRTK-ISLFEDDQYFRDALYKELMKLHDYLYSFYL 228
           L  S   LES +Q        E+++   K +     +Q   D + K+L +  + + +   
Sbjct: 92  LEESKKVLESEKQAFENEKEQEREEQLAKAMEKLNSEQNILDEVTKKLEQSEEEVLAARG 151

Query: 229 CVKLLSTLIKDIPNNL-LGKTVREVYTKCATECITDTPSFKECMQLLSFQSQIKIVDTIT 287
            ++ L+  +++        KT  E  +K      T    F + ++ +  Q  I       
Sbjct: 152 AIQELTEKLEESEKETSTAKTELEAVSKKLDSSETSLKEFSDMIEAMKIQL-INCEKQKD 210

Query: 288 GALKLLNSHLQSVSPIKPLQATPKKN--NNNTDKVFAHRELGESFAKTVRVHLMTFLRQL 345
            A++LL   L+ V          K+    + T ++  H E  E   K +     +     
Sbjct: 211 EAVELLKQKLEEVEKNMSDVEVQKQLLLESTTSEMKQHAEAAEIVKKQLEEAQSSIENLK 270

Query: 346 ENANTEASISTAMDTDTNDNVENVPGSRYKLKEKLLKATRVEKIQSEFEMIR 397
           ++A  E ++ TA+++D +  +  +   + +  +K L+A+  EK +   +M R
Sbjct: 271 KDAENERNLKTALESDESSAISEIT-KQMEAAKKELEASEKEKSELREQMDR 321


>Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical
           protein F59A2.6 protein.
          Length = 1133

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 44/232 (18%), Positives = 93/232 (40%), Gaps = 6/232 (2%)

Query: 170 LNLSPNDLESIRQLKSFRPYLEKQDCRTK-ISLFEDDQYFRDALYKELMKLHDYLYSFYL 228
           L  S   LES +Q        E+++   K +     +Q   D + K+L +  + + +   
Sbjct: 92  LEESKKVLESEKQAFENEKEQEREEQLAKAMEKLNSEQNILDEVTKKLEQSEEEVLAARG 151

Query: 229 CVKLLSTLIKDIPNNL-LGKTVREVYTKCATECITDTPSFKECMQLLSFQSQIKIVDTIT 287
            ++ L+  +++        KT  E  +K      T    F + ++ +  Q  I       
Sbjct: 152 AIQELTEKLEESEKETSTAKTELEAVSKKLDSSETSLKEFSDMIEAMKIQL-INCEKQKD 210

Query: 288 GALKLLNSHLQSVSPIKPLQATPKKN--NNNTDKVFAHRELGESFAKTVRVHLMTFLRQL 345
            A++LL   L+ V          K+    + T ++  H E  E   K +     +     
Sbjct: 211 EAVELLKQKLEEVEKNMSDVEVQKQLLLESTTSEMKQHAEAAEIVKKQLEEAQSSIENLK 270

Query: 346 ENANTEASISTAMDTDTNDNVENVPGSRYKLKEKLLKATRVEKIQSEFEMIR 397
           ++A  E ++ TA+++D +  +  +   + +  +K L+A+  EK +   +M R
Sbjct: 271 KDAENERNLKTALESDESSAISEIT-KQMEAAKKELEASEKEKSELREQMDR 321


>U39849-1|AAA81045.2|  332|Caenorhabditis elegans Serpentine
           receptor, class h protein39 protein.
          Length = 332

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 194 DCRTKISLFEDDQYFRD-ALYKELMKLHDYLYSFYLCVKLLSTLIKDIPNNLL 245
           DC+ ++SL E+   FR+   +  +++L    Y+ YL +    T +KD+   L+
Sbjct: 2   DCKQEVSLLENPVIFRNFCFFLTILELFPTSYAMYLLIYHSPTQMKDMKRCLI 54


>Z82278-6|CAB05258.1|  690|Caenorhabditis elegans Hypothetical
           protein M162.7 protein.
          Length = 690

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 11/117 (9%)

Query: 210 DALYKELMKLHDYLYS-------FYLCVKLLSTLIKDIPNNLLGKTVREVYT-KCATECI 261
           D   KE+ KL  Y Y+       F    KL   LI D       K   E+   KC  +  
Sbjct: 398 DGTLKEIGKLVSYHYNYLHQRHPFDKYSKLFQKLI-DGRKEFTDKVDNELSVIKCFQQLE 456

Query: 262 TDTPSFKECMQLLSFQSQIK--IVDTITGALKLLNSHLQSVSPIKPLQATPKKNNNN 316
            D+   ++ +Q++     +    V+ I G   +++  LQ++S +K +    K+N+NN
Sbjct: 457 QDSEDLQKVIQVIQKMRNLDNASVENIKGIPSVVSELLQNISKVKEVSDKMKENSNN 513


>Z74041-1|CAA98520.1|  255|Caenorhabditis elegans Hypothetical
           protein T03F7.5 protein.
          Length = 255

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 189 YLEKQDCRTKISLFEDDQYFRDALYKELMKLHDYLYSFYLCVKLLSTL 236
           +LE   C +  S+FEDDQ     + K ++ +H +  +F L  +L  T+
Sbjct: 9   FLESAVCLSIGSVFEDDQCAEIPIKKIILCIHRFAEAFSLAAQLFFTI 56


>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
           protein Y48G9A.4 protein.
          Length = 1115

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 337 HLMTFLRQLENANTEASISTAMDTDTNDNVENVPGSRYKLKEKLLKATRVEKIQSEFEMI 396
           HL TF  QL+  +   S+    D+   D  E   G +   KE+ LK T   +  S F   
Sbjct: 887 HLKTFSEQLKFVDKATSVQ--WDSVQTDMKELAAGFKMAEKEQELKGTDCPEALSTFTAS 944

Query: 397 RCRFISYLEEMF 408
           R + ++ LE+ F
Sbjct: 945 RKQKMADLEQAF 956


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.136    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,650,674
Number of Sequences: 27539
Number of extensions: 539604
Number of successful extensions: 1582
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1581
Number of HSP's gapped (non-prelim): 7
length of query: 518
length of database: 12,573,161
effective HSP length: 85
effective length of query: 433
effective length of database: 10,232,346
effective search space: 4430605818
effective search space used: 4430605818
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 62 (29.1 bits)