GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000323-TA|BGIBMGA000323-PA|IPR010748|Origin recognition
complex subunit 3, N-terminal
         (518 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   3.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   8.1  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 152 GDNTKVLCCKREDLEEAIL 170
           GD+  V  C R +L EAIL
Sbjct: 754 GDHLGVFACNRSELVEAIL 772


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 8.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 363  NDNVENVPGSRYKLKEKLLKATRVEKIQS 391
            N  +  VPGS Y   +++ + T +  I+S
Sbjct: 1650 NRKLPPVPGSNYNTCDRIKRGTVIRSIRS 1678


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.136    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,148
Number of Sequences: 429
Number of extensions: 5709
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 2
length of query: 518
length of database: 140,377
effective HSP length: 61
effective length of query: 457
effective length of database: 114,208
effective search space: 52193056
effective search space used: 52193056
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 46 (22.6 bits)