GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000322-TA|BGIBMGA000322-PA|IPR001699|Transcription
factor, T-box, IPR008967|p53-like transcription factor, DNA-binding,
IPR002070|Transcription factor, Brachyury
         (469 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...   373   e-105
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.   179   4e-47
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...   128   1e-31
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...   118   9e-29
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   8.0  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   8.0  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score =  373 bits (918), Expect = e-105
 Identities = 176/246 (71%), Positives = 196/246 (79%), Gaps = 6/246 (2%)

Query: 3   ASHILSAVEP--TXXXXXXXXXXXXXXXXALDDRELWVRFQTLTNEMIVTKNGRRMFPVV 60
           A HILSAVE   T                 LDDR+LW+RF+ LTNEMIVTKNGRRMFPVV
Sbjct: 2   AQHILSAVESEITSGGKSKGDPTERDLIVTLDDRDLWLRFECLTNEMIVTKNGRRMFPVV 61

Query: 61  KVTASGLDPTAMYTVLLEFVQVDSHRWKYVNGEWVPGGKAEVPPSNAIYIHPESPNFGAH 120
           KVTA+GLDP AMYTVLLEFVQ+D HRWKYVNGEWVPGGKAEVPPSN IYIHPESPNFGAH
Sbjct: 62  KVTAAGLDPKAMYTVLLEFVQIDPHRWKYVNGEWVPGGKAEVPPSNPIYIHPESPNFGAH 121

Query: 121 WMKEPISFAKVKLTNKTNGNGQIMLNSLHKYEPRVHLVKVGTDLRRIMTYPFPETQFIAV 180
           WMKE ISFAKVKLTNK+NGNGQIMLNSLHKY+P VHLV+VGT+ RR++++PFPETQFIAV
Sbjct: 122 WMKESISFAKVKLTNKSNGNGQIMLNSLHKYKPTVHLVRVGTEPRRVISFPFPETQFIAV 181

Query: 181 TAYQNEEVTSLKIKYNPFAKAFLDAKERPEGYYQRDFVGTXXXXXXXXXXXXXXFGGWFV 240
           TAYQNEEVT+LKIKYNPFAKAFLDAKERP+  YQR++  T              +G WF+
Sbjct: 182 TAYQNEEVTALKIKYNPFAKAFLDAKERPDSIYQREYSPT----FTQQQTQYSQYGSWFL 237

Query: 241 TSQSLY 246
             Q +Y
Sbjct: 238 PHQPIY 243



 Score = 29.9 bits (64), Expect = 0.040
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 168 MTYPFPETQFIAVTAYQNEEVTSLKIKYNPFAKAFLDAKERPEGYYQRDFVG 219
           +TYP    Q ++ T YQN E  S+    +P+ +   + +  P GY+Q +  G
Sbjct: 359 LTYPSYYNQDVSCTHYQNPEYISVVNPESPYPQIGSE-RATPVGYHQNEVGG 409


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score =  179 bits (435), Expect = 4e-47
 Identities = 87/178 (48%), Positives = 118/178 (66%), Gaps = 6/178 (3%)

Query: 31  LDDRELWVRFQTLTNEMIVTKNGRRMFPVVKVTASGLDPTAMYTVLLEFVQVDSHRWKYV 90
           L ++ELW +F  L  EMI+TK+GRRMFP + +  + LDP+A Y + LE       R+K+ 
Sbjct: 23  LANKELWDQFHDLQTEMIITKSGRRMFPALNLKITDLDPSADYCLFLEMTLAHHCRFKFS 82

Query: 91  NGE-WVPGGKAEVPPSNAIYIHPESPNFGAHWMKEPISFAKVKLTNKTNG-NGQIMLNSL 148
           +   W P G  E    + IY+HPESP+ G+HWM + ISF++VKLTN  +   GQ++L+S+
Sbjct: 83  SSVGWSPAGHEEAQSPHRIYMHPESPSKGSHWMNQDISFSRVKLTNTCSPPQGQLVLSSM 142

Query: 149 HKYEPRVHLVKVGT----DLRRIMTYPFPETQFIAVTAYQNEEVTSLKIKYNPFAKAF 202
           HKY+PR+ +VK  T           + FPETQFIAVTAYQNE++T LKI YNPFAK F
Sbjct: 143 HKYQPRILIVKASTAQALGWAPTNVFTFPETQFIAVTAYQNEKITKLKINYNPFAKGF 200


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score =  128 bits (308), Expect = 1e-31
 Identities = 62/134 (46%), Positives = 86/134 (64%), Gaps = 5/134 (3%)

Query: 55  RMFPVVKVTASGLDPTAMYTVLLEFVQVDSHRWKYVNGEWVPGGKAEVPPSNAIYIHPES 114
           RMFP  KV  SGLD  + Y +L++ V  D  R+K+ N  W+  GKA+      +YIHP+S
Sbjct: 1   RMFPAFKVRVSGLDKKSKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDS 60

Query: 115 PNFGAHWMKEPISFAKVKLTNK-TNGNGQIMLNSLHKYEPRVHLVKVGTDLR----RIMT 169
           P+ G  WM++ +SF K+KLTN  ++ +G  +LNS+HKY+PR HLV+    L+       T
Sbjct: 61  PSTGEQWMQKVVSFHKLKLTNNISDKHGFTILNSMHKYQPRFHLVRANDILKLPYSTFRT 120

Query: 170 YPFPETQFIAVTAY 183
           Y F ET+FIAVTAY
Sbjct: 121 YVFKETEFIAVTAY 134


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score =  118 bits (284), Expect = 9e-29
 Identities = 62/143 (43%), Positives = 87/143 (60%), Gaps = 14/143 (9%)

Query: 55  RMFPVVKVTASGLDPTAMYTVLLEFVQVDSHRWKYVNGEWVPGGKAEVPPSNAIYIHPES 114
           RMFP  KV  SGLD  + Y +L++ V  D  R+K+ N  W+  GKA+      +YIHP+S
Sbjct: 1   RMFPAFKVRVSGLDKKSKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDS 60

Query: 115 PNFGAHWMKEPISFAKVKLTNK-TNGNGQI---------MLNSLHKYEPRVHLVKVGTDL 164
           P+ G  WM++ +SF K+KLTN  ++ +G +         +LNS+HKY+PR HLV+    L
Sbjct: 61  PSTGEQWMQKVVSFHKLKLTNNISDKHGFLKEKAVDFLTILNSMHKYQPRFHLVRANDIL 120

Query: 165 R----RIMTYPFPETQFIAVTAY 183
           +       TY F ET+FIAVTAY
Sbjct: 121 KLPYSTFRTYVFKETEFIAVTAY 143


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 67  LDPTAMYTVLLEFVQVDSHRWKYVNGE 93
           LDP A   V+  F  +D H +  ++ +
Sbjct: 199 LDPFACTHVIYAFATIDPHNFNMISND 225


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 15/55 (27%), Positives = 21/55 (38%)

Query: 395 PSEYVGTGEAAYSTEGMQFGPTGPALEAAGHSAEGRASPSGQDHSTSDREYKFST 449
           P+ Y     A  S +G+ + P   A   A       A+P   D S S     FS+
Sbjct: 90  PTYYNLADPARDSRKGLFWSPAATAAATATEYKYSAAAPGPSDPSVSSCHQGFSS 144


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.132    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,128
Number of Sequences: 317
Number of extensions: 3561
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 7
length of query: 469
length of database: 114,650
effective HSP length: 59
effective length of query: 410
effective length of database: 95,947
effective search space: 39338270
effective search space used: 39338270
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 45 (22.2 bits)