GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000322-TA|BGIBMGA000322-PA|IPR001699|Transcription
factor, T-box, IPR008967|p53-like transcription factor, DNA-binding,
IPR002070|Transcription factor, Brachyury
         (469 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    27   4.3  
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    27   5.6  
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom...    27   5.6  
SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyc...    27   5.6  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    26   9.8  

>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 4/44 (9%)

Query: 155 VHLVKVGTDLRRIMTYPFPETQFIAVTAYQNEEVTSLKIKYNPF 198
           +H   + +D + I+T+   E  FI++T Y +E+V    + ++PF
Sbjct: 808 IHRASITSDEQTILTFTEREDLFISLTPYLSEDV----LNHSPF 847


>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 405 AYSTEGMQFGPTGPALEAAGHSAEGRASPSGQDHSTSDREYKFSTDE 451
           A   E +   PTG A  AA  +A G A+P+ ++ +  + + +  +DE
Sbjct: 56  AAGNEKLATVPTGGAASAAPAAAAGGAAPAAEEAAKEEAKEEEESDE 102


>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 144 MLNSLHKYEPRVHLVKVGTDLRRIMTYPFPET--QFIAVTAYQNEEVTSLKIK 194
           +LN  H YE R  LV  GT    +   P  +T  Q+   T+  N  V ++  K
Sbjct: 191 LLNMTHSYENRQQLVSAGTIPVLVSLLPSSDTDVQYYCTTSISNIAVDAVHRK 243


>SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 160 VGTDLRRIMTYPFPETQFIAVTAYQ 184
           +GTDL R++T    ETQFI    YQ
Sbjct: 100 LGTDLHRLLTSRPLETQFIQYFLYQ 124


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 385 PNSLNTYGYQPSEYVGTGEAAYSTEGMQFG 414
           PN+ + YG+  +EY+GT  +  ST    +G
Sbjct: 318 PNTGDHYGFDGAEYLGTPLSVGSTTAYLYG 347


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.132    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,727,067
Number of Sequences: 5004
Number of extensions: 63868
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 112
Number of HSP's gapped (non-prelim): 5
length of query: 469
length of database: 2,362,478
effective HSP length: 75
effective length of query: 394
effective length of database: 1,987,178
effective search space: 782948132
effective search space used: 782948132
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 55 (26.2 bits)