Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000322-TA|BGIBMGA000322-PA|IPR001699|Transcription
factor, T-box, IPR008967|p53-like transcription factor, DNA-binding,
IPR002070|Transcription factor, Brachyury
(469 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1055 - 9253936-9254130,9254271-9254483,9254588-9254758,925... 35 0.16
01_03_0086 - 12316010-12316162,12316626-12316712,12316810-123169... 31 1.5
02_05_0260 - 27233734-27234324,27234422-27234573,27235006-272351... 31 2.0
03_05_0938 - 28978696-28978809,28978942-28979028,28979124-289792... 30 3.4
07_01_0285 - 2084560-2085246 30 4.5
04_04_0217 - 23693124-23693535,23693965-23694052,23694428-236945... 29 6.0
02_04_0277 - 21494616-21494747,21494830-21494916,21495025-214951... 29 6.0
05_03_0397 + 13488642-13488941,13489711-13489963,13490594-134906... 29 7.9
01_01_0517 + 3803740-3806106,3806226-3806312,3806397-3807035,380... 29 7.9
>07_01_1055 -
9253936-9254130,9254271-9254483,9254588-9254758,
9255743-9255859,9257021-9257186,9258885-9258934,
9259095-9259268
Length = 361
Score = 34.7 bits (76), Expect = 0.16
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 19/85 (22%)
Query: 94 WVPGGKAEVPPSNAIY-IHPESPNFGAHWMKEPISF---AKVKLTNKTNGNGQIMLNSLH 149
WV VPPS IY ++PE +F W + PI + A+ L T+G+ +
Sbjct: 114 WVQTLSLLVPPSGTIYQVYPEGTHFMIPWFERPIIYDVRARPNLVESTSGSRDL------ 167
Query: 150 KYEPRVHLVKVGTDLRRIMTYPFPE 174
+VK+G R++T P PE
Sbjct: 168 ------QMVKIGL---RVLTRPMPE 183
>01_03_0086 -
12316010-12316162,12316626-12316712,12316810-12316942,
12317057-12317330,12317588-12317714,12317815-12318071,
12319055-12319139
Length = 371
Score = 31.5 bits (68), Expect = 1.5
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 388 LNTYGYQPSEYVGTGEAAYSTEGMQFGPTGPALEAAGHSAEGRASPSGQDHSTSDREYKF 447
L T+GY EY TG+ + ++ FG L G P GQ + +
Sbjct: 239 LGTFGYHAPEYAMTGQLSTKSDVYSFGVVLLEL-LTGRKPVDHTLPRGQQSLVTWATPRL 297
Query: 448 STDETRH--SPCEESSIPPRSPAQ 469
S D+ + P E PP++ A+
Sbjct: 298 SEDKVKQCVDPRLEGDYPPKAVAK 321
>02_05_0260 -
27233734-27234324,27234422-27234573,27235006-27235153,
27235547-27235956,27236137-27236212
Length = 458
Score = 31.1 bits (67), Expect = 2.0
Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 388 LNTYGYQPSEYVGTGEAAYSTEGMQFGPTGPALEAAGHSAEGRASPSGQDH 438
+ TYGY EYV TG ++ FG L G A PSGQ H
Sbjct: 290 MGTYGYAAPEYVATGHLYVKSDVYGFGVVLLEL-LTGLRALDAGRPSGQHH 339
>03_05_0938 -
28978696-28978809,28978942-28979028,28979124-28979256,
28979592-28979865,28980242-28980368,28980523-28980773,
28980854-28980935
Length = 355
Score = 30.3 bits (65), Expect = 3.4
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 3/84 (3%)
Query: 388 LNTYGYQPSEYVGTGEAAYSTEGMQFGPTGPALEAAGHSAEGRASPSGQDHSTSDREYKF 447
L T+GY EY TG+ ++ FG L G P GQ + +
Sbjct: 236 LGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLEL-LTGRKPVDHTMPKGQQSLVTWATPRL 294
Query: 448 STDETRH--SPCEESSIPPRSPAQ 469
S D+ + P PP++ A+
Sbjct: 295 SEDKVKQCVDPKLNDEYPPKAVAK 318
>07_01_0285 - 2084560-2085246
Length = 228
Score = 29.9 bits (64), Expect = 4.5
Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 5/76 (6%)
Query: 385 PNSLNTYGYQPSEYVGTGEAAY---STEGMQFGPTG--PALEAAGHSAEGRASPSGQDHS 439
PN L G++ Y G+G A S+ P G AL GH ++GR S
Sbjct: 85 PNPLGPIGHREDYYSGSGSATAFFPSSRDPVHVPIGRDTALPPIGHPSQGRVKSGSSSAS 144
Query: 440 TSDREYKFSTDETRHS 455
D S+ HS
Sbjct: 145 AGDDMINSSSAAVSHS 160
>04_04_0217 -
23693124-23693535,23693965-23694052,23694428-23694503,
23694729-23694787,23694853-23694934,23695533-23696577,
23696700-23696998
Length = 686
Score = 29.5 bits (63), Expect = 6.0
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 132 KLTNKTNGNGQIMLNSLHKYEPRVHLVK-VGTDLRRI---MTYPFPETQFIAVTAYQNEE 187
K+ +K+NG+ + N+ H Y+ VH++K +G D R + P Q VT + +
Sbjct: 477 KIADKSNGD--VADNTYHLYKEDVHMMKEMGMDAYRFSISWSRILPRVQSF-VTLFHYDT 533
Query: 188 VTSLKIKYNPF 198
+L+ KYN F
Sbjct: 534 PQALEDKYNGF 544
>02_04_0277 -
21494616-21494747,21494830-21494916,21495025-21495157,
21495267-21495540,21495829-21495955,21496048-21496311
Length = 338
Score = 29.5 bits (63), Expect = 6.0
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 388 LNTYGYQPSEYVGTGEAAYSTEGMQFGPTGPALEAAGHSAEGRASPSGQDHSTSDREYKF 447
L T+GY EY TG+ ++ FG L G P GQ + +
Sbjct: 213 LGTFGYHAPEYAMTGQINQKSDVYSFGVILLEL-LTGRKPVDHTMPKGQQSLVTWATPRL 271
Query: 448 STDETRH--SPCEESSIPPRSPAQ 469
S D+ + P + PP++ A+
Sbjct: 272 SEDKVKQCVDPKLNNDYPPKAVAK 295
>05_03_0397 +
13488642-13488941,13489711-13489963,13490594-13490673,
13491251-13491393,13491512-13491610,13491785-13491974,
13492504-13492902,13492993-13493400
Length = 623
Score = 29.1 bits (62), Expect = 7.9
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 397 EYVGTGEAAYSTEGMQ-FGPTGPALEAAGHSAEGRASPSGQDHSTSDREY 445
E + G+A YS +G GPT P +AA SA P G++ D ++
Sbjct: 571 EVMQLGQALYSQQGAPGAGPT-PGADAAAGSAGPSEKPGGEEGDVIDADF 619
>01_01_0517 + 3803740-3806106,3806226-3806312,3806397-3807035,
3807118-3807282,3807363-3807657,3807739-3807953,
3808125-3808430,3808539-3808602,3808735-3808974,
3809150-3809253
Length = 1493
Score = 29.1 bits (62), Expect = 7.9
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 125 PISFAKVKLTNKTNGNGQIMLNSLH-KYEPRVHLVKVG 161
P+S KLT G+IMLN++H +Y P + V G
Sbjct: 1232 PLSVQDDKLTQDWPSEGEIMLNNVHVRYAPHLPFVLKG 1269
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.132 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,455,424
Number of Sequences: 37544
Number of extensions: 428703
Number of successful extensions: 960
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 959
Number of HSP's gapped (non-prelim): 9
length of query: 469
length of database: 14,793,348
effective HSP length: 85
effective length of query: 384
effective length of database: 11,602,108
effective search space: 4455209472
effective search space used: 4455209472
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 62 (29.1 bits)
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