Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000322-TA|BGIBMGA000322-PA|IPR001699|Transcription
factor, T-box, IPR008967|p53-like transcription factor, DNA-binding,
IPR002070|Transcription factor, Brachyury
(469 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33933| Best HMM Match : T-box (HMM E-Value=0) 296 3e-80
SB_17422| Best HMM Match : No HMM Matches (HMM E-Value=.) 187 1e-47
SB_45686| Best HMM Match : T-box (HMM E-Value=0) 167 2e-41
SB_17421| Best HMM Match : No HMM Matches (HMM E-Value=.) 163 4e-40
SB_56801| Best HMM Match : T-box (HMM E-Value=0) 139 4e-33
SB_3529| Best HMM Match : T-box (HMM E-Value=0) 139 4e-33
SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.) 136 5e-32
SB_21574| Best HMM Match : T-box (HMM E-Value=0) 128 1e-29
SB_50741| Best HMM Match : No HMM Matches (HMM E-Value=.) 109 4e-24
SB_47746| Best HMM Match : T-box (HMM E-Value=1.8e-23) 106 4e-23
SB_45684| Best HMM Match : T-box (HMM E-Value=1.5e-32) 94 2e-19
SB_17249| Best HMM Match : T-box (HMM E-Value=4.8e-11) 68 2e-11
SB_56920| Best HMM Match : T-box (HMM E-Value=2.9e-13) 57 3e-08
SB_11975| Best HMM Match : T-box (HMM E-Value=2.8e-06) 43 5e-04
SB_17271| Best HMM Match : Ank (HMM E-Value=1.7e-10) 32 0.86
SB_22789| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.6
SB_43399| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.6
SB_207| Best HMM Match : RVT_1 (HMM E-Value=7.4e-06) 30 4.6
SB_39268| Best HMM Match : Y_phosphatase (HMM E-Value=0) 29 6.1
SB_21646| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.1
SB_3463| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.1
SB_1431| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.1
SB_42687| Best HMM Match : UPF0262 (HMM E-Value=2.1) 29 8.0
SB_18561| Best HMM Match : Anti-silence (HMM E-Value=0) 29 8.0
>SB_33933| Best HMM Match : T-box (HMM E-Value=0)
Length = 402
Score = 296 bits (726), Expect = 3e-80
Identities = 131/182 (71%), Positives = 157/182 (86%), Gaps = 2/182 (1%)
Query: 31 LDDRELWVRFQTLTNEMIVTKNGRRMFPVVKVTASGLDPTAMYTVLLEFVQVDSHRWKYV 90
L++ +LW RF++LTNEMIVTKNGRRMFPV+KV +GL+P AMY+ LL+FV V+ HRWKYV
Sbjct: 46 LEEADLWRRFKSLTNEMIVTKNGRRMFPVLKVNVTGLEPKAMYSFLLDFVCVEGHRWKYV 105
Query: 91 NGEWVPGGKAEVPPSNAIYIHPESPNFGAHWMKEPISFAKVKLTNKTNGNGQIMLNSLHK 150
NGEWV GGK E P + +YIHP+SPNFGAHWMK+P+ F+KVKLTNK N GQIMLNSLHK
Sbjct: 106 NGEWVSGGKPEPPTPSCVYIHPDSPNFGAHWMKQPVGFSKVKLTNKQNSGGQIMLNSLHK 165
Query: 151 YEPRVHLVKVGT--DLRRIMTYPFPETQFIAVTAYQNEEVTSLKIKYNPFAKAFLDAKER 208
YEPR+H++KVG + R ++++ FPETQFIAVTAYQNEE+TSLKIKYNPFAKAFLDAKER
Sbjct: 166 YEPRLHIIKVGASDNNRTVVSHSFPETQFIAVTAYQNEEITSLKIKYNPFAKAFLDAKER 225
Query: 209 PE 210
E
Sbjct: 226 QE 227
>SB_17422| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 187 bits (456), Expect = 1e-47
Identities = 88/179 (49%), Positives = 121/179 (67%), Gaps = 7/179 (3%)
Query: 31 LDDRELWVRFQTLTNEMIVTKNGRRMFPVVKVTASGLDPTAMYTVLLEFVQVDSHRWKYV 90
L++RELW +F + EMI+TKNGRRMFPV++V SGL+P Y + ++ V D +R+KY
Sbjct: 93 LENRELWEKFHEIGTEMIITKNGRRMFPVIRVNISGLNPKEEYVLAMDLVPADENRYKYH 152
Query: 91 NGEWVPGGKAEVPPSNAIYIHPESPNFGAHWMKEPISFAKVKLTNKTNGN-GQIMLNSLH 149
N EW GKAE + I+IHP+SP G+ WM++ ISF K+KLTN N G ++LNS+H
Sbjct: 153 NTEWAITGKAENLIPSRIFIHPDSPGTGSQWMRQVISFQKLKLTNNHNDQAGHVILNSMH 212
Query: 150 KYEPRVHLVKVGT----DLRR--IMTYPFPETQFIAVTAYQNEEVTSLKIKYNPFAKAF 202
KY+PR+H++ +++ TY F ET F+AVTAYQN +T LKI+ NPFAK F
Sbjct: 213 KYQPRIHIIPTKDYNVFSMKKGTFYTYQFQETTFMAVTAYQNPRITQLKIENNPFAKGF 271
>SB_45686| Best HMM Match : T-box (HMM E-Value=0)
Length = 947
Score = 167 bits (406), Expect = 2e-41
Identities = 86/193 (44%), Positives = 119/193 (61%), Gaps = 11/193 (5%)
Query: 31 LDDRELWVRFQTLTNEMIVTKNGRRMFPVVKVTASGLDPTAMYTVLLEFVQVDSHRWKYV 90
L+ RELW RF L EMI+TK+GRRMFP ++++ SG+ P A Y VLL+ V VD R++Y
Sbjct: 607 LEGRELWGRFNELGTEMIITKSGRRMFPTLRISVSGVQPKANYMVLLDIVPVDDKRYRYA 666
Query: 91 --NGEWVPGGKAEVPPSNAIYIHPESPNFGAHWMKEPISFAKVKLTNK-TNGNGQIMLNS 147
W+ GKA+ P +Y+HP+SP G +K+ ISF KVKLTN T+ NG ++L+S
Sbjct: 667 YHRSTWLVAGKADPPAPVRLYMHPDSPFTGEQLLKQIISFEKVKLTNNDTDHNGHLILHS 726
Query: 148 LHKYEPRVHLVK--------VGTDLRRIMTYPFPETQFIAVTAYQNEEVTSLKIKYNPFA 199
+HKY+PRVHL++ V + + T+ FPET FIAVTAYQN+ V NP
Sbjct: 727 MHKYKPRVHLMRKRDHTASIVNLNSEEVKTFTFPETSFIAVTAYQNQLVREFANYDNPAK 786
Query: 200 KAFLDAKERPEGY 212
++R + Y
Sbjct: 787 NRQQSIRQRVQRY 799
>SB_17421| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 555
Score = 163 bits (395), Expect = 4e-40
Identities = 76/164 (46%), Positives = 106/164 (64%), Gaps = 6/164 (3%)
Query: 31 LDDRELWVRFQTLTNEMIVTKNGRRMFPVVKVTASGLDPTAMYTVLLEFVQVDSHRWKYV 90
LD+++LW F EM++TK GRRMFP +K SGLDP A Y LL+ + D R+K+
Sbjct: 93 LDNKDLWQSFHAEKTEMVITKAGRRMFPPIKARISGLDPRAKYFFLLDIIPADDCRYKFH 152
Query: 91 NGEWVPGGKAEVPPSNAIYIHPESPNFGAHWMKEPISFAKVKLTNK-TNGNGQIMLNSLH 149
N W+ GKA+ +YIHP+SP+ G WM++ ISF K+KLTN + +G +LNS+H
Sbjct: 153 NCRWMVAGKADPELDKPLYIHPDSPSTGTQWMQKTISFHKMKLTNNIADKHGYTILNSMH 212
Query: 150 KYEPRVHLVKVGTDLR-----RIMTYPFPETQFIAVTAYQNEEV 188
KY+PR+H+V+ + T+ FPET FIAVTAYQNE++
Sbjct: 213 KYQPRIHIVRADDGYKYPLNQPFKTFTFPETTFIAVTAYQNEKL 256
>SB_56801| Best HMM Match : T-box (HMM E-Value=0)
Length = 287
Score = 139 bits (337), Expect = 4e-33
Identities = 78/184 (42%), Positives = 106/184 (57%), Gaps = 33/184 (17%)
Query: 54 RRMFPVVKVTASGLDPTAMYTVLLEFVQVDSHRWKYV--NGEWVPGGKAEVPPSNAIYIH 111
+RMFP +V GL+P Y ++++FV VD R++Y + +W+ GKA+ ++IH
Sbjct: 38 QRMFPPFQVRLYGLEPNVKYILMMDFVPVDDKRYRYAFHSSKWLVAGKADPSVPGRVHIH 97
Query: 112 PESPNFGAHWMKEPISFAKVKLTN--------------------KTNGNGQIMLNSLHKY 151
P+SP GA WMK+ +SF K+KLTN K GNG I+LNS+HKY
Sbjct: 98 PDSPCTGAQWMKQIVSFDKLKLTNNLMDDNGHATTDMQVLDKLSKWTGNGHIILNSMHKY 157
Query: 152 EPRVHLVKVGTDLR-----------RIMTYPFPETQFIAVTAYQNEEVTSLKIKYNPFAK 200
+PR H+V V +D I T+ FPE+QF+AVTAYQN +T LKI NPFAK
Sbjct: 158 QPRFHVVLVTSDKNANANLNDVNRDHIKTFVFPESQFMAVTAYQNHMITQLKIASNPFAK 217
Query: 201 AFLD 204
F D
Sbjct: 218 GFRD 221
>SB_3529| Best HMM Match : T-box (HMM E-Value=0)
Length = 512
Score = 139 bits (337), Expect = 4e-33
Identities = 71/158 (44%), Positives = 100/158 (63%), Gaps = 14/158 (8%)
Query: 59 VVKVTASGLDPTAMYTVLLEFVQVDSHRWKYV--NGEWVPGGKAEVPPSNAIYIHPESPN 116
V +V GL+P+A + ++++FV VD R++Y + +W+ GKA+ ++IHP+SP
Sbjct: 189 VYQVRLYGLEPSAKHILMMDFVPVDDKRYRYAFHSSKWLVAGKADPSVPGRVHIHPDSPC 248
Query: 117 FGAHWMKEPISFAKVKLTNK-TNGNGQIMLNSLHKYEPRVHLVKVGTDLR---------- 165
GA WMK+ +SF K+KLTN + NG I+LNS+HKY+PR H++ D
Sbjct: 249 TGAQWMKQIVSFDKLKLTNNLMDDNGHIILNSMHKYQPRFHVILEDPDRSSTASLHEVSK 308
Query: 166 -RIMTYPFPETQFIAVTAYQNEEVTSLKIKYNPFAKAF 202
I T+ FPETQF+AVTAYQN +T LKI NPFAK F
Sbjct: 309 DHIRTFIFPETQFMAVTAYQNHMITQLKIASNPFAKGF 346
Score = 30.7 bits (66), Expect = 2.6
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 31 LDDRELWVRFQTLTNEMIVTKNGRRMFPVV 60
L+ + LW F +L EMIVTK GR+ V+
Sbjct: 129 LEMKSLWDEFHSLGTEMIVTKAGRKYNVVI 158
>SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2346
Score = 136 bits (328), Expect = 5e-32
Identities = 74/200 (37%), Positives = 114/200 (57%), Gaps = 11/200 (5%)
Query: 31 LDDRELWVRFQTLTNEMIVTKNGRRMFPVVKVTASGLDPTAMYTVLLEFVQVDSHRWKYV 90
L + ELW +F + EMI+TK+GRRMFP + + GL Y V+++ ++D ++K+V
Sbjct: 13 LKNSELWEQFNRIGTEMILTKSGRRMFPYLSIAIEGLSSEFKYVVMVDMARIDLKKYKFV 72
Query: 91 --NGEWVPGGKAEVPP--SNAIYIHPESPNFGAHWMKEPISFAKVKLTN--KTNGNGQIM 144
+ +W+P E P S H P +H ++ I F K+KLTN K + QI+
Sbjct: 73 DQSQQWLPVSPHEYPDVMSVGALCHQGCP-LTSHSLEAGILFNKLKLTNALKEDMEDQIL 131
Query: 145 LNSLHKYEPRVHLVK----VGTDLRRIMTYPFPETQFIAVTAYQNEEVTSLKIKYNPFAK 200
L S+H+Y PR+H++ D R + + F ET+FIAVTAY N+++T LKI+ NPFA+
Sbjct: 132 LESMHRYAPRIHVMAEQDFANKDWTRALVFTFQETEFIAVTAYMNKQITQLKIQNNPFAR 191
Query: 201 AFLDAKERPEGYYQRDFVGT 220
AF + K + + V T
Sbjct: 192 AFREPKLKKRAFMDAISVDT 211
>SB_21574| Best HMM Match : T-box (HMM E-Value=0)
Length = 473
Score = 128 bits (308), Expect = 1e-29
Identities = 70/183 (38%), Positives = 104/183 (56%), Gaps = 6/183 (3%)
Query: 31 LDDRELWVRFQTLTNEMIVTKNGRRMFPVVKVTASGLDPTAMYTVLLEFVQVDSHRWKY- 89
L D LW F + EMI+T++GRRMFP++ SGL+P ++ ++ + +D R++Y
Sbjct: 12 LRDESLWRLFHSHQTEMIITRSGRRMFPILDFRLSGLEPDEYFSCTVQIISLDDFRYRYD 71
Query: 90 VN-GEWVPGGKA-EVPPSNAIYIHPESPNFGAHWMKEPISFAKVKLTNKTNGN-GQIMLN 146
+N WV G A ++ I HP G W E F K+KLTN I+L
Sbjct: 72 LNKATWVATGAALKLDQRRVINSHPHGATLGKIWNSEGAKFDKLKLTNHIKPCCDHIVLA 131
Query: 147 SLHKYEPRVHLVKV-GTDLRRIMTYPFPETQFIAVTAYQNEEVTSLKIKYNPFAKAFLDA 205
SL KY+ ++ + ++ T R++ + FPET+F+AVT YQN EV LKI +NPFAK+F
Sbjct: 132 SLQKYKVQLVITRLHATQCERLL-FDFPETEFMAVTCYQNPEVVRLKINHNPFAKSFRQG 190
Query: 206 KER 208
K +
Sbjct: 191 KRQ 193
>SB_50741| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 109 bits (263), Expect = 4e-24
Identities = 63/178 (35%), Positives = 91/178 (51%), Gaps = 7/178 (3%)
Query: 36 LWVRFQTLTNEMIVTKNGRRMFPVVKVTASGLDPTAMYTVLLEFVQVDSHRWKYV--NGE 93
LW F NEM++T+ GRR+FPV GLDP Y+ L V D R+ + +
Sbjct: 157 LWKAFHEHQNEMLLTRAGRRLFPVPSFRLEGLDPKTRYSCELRLVSSDYKRYSFNMRTSK 216
Query: 94 WVP-GGKAEVPPSNAIYIHPESPNFGAHWMKEPISFAKVKLTNKTNGNGQIMLNSLHKYE 152
W+P G + PS Y HP + GA W+ + F K+K+ N + + L S KY
Sbjct: 217 WLPIGTVCCMEPSR--YCHPMGGSLGADWLDDGARFDKLKIGN-VHRQKVVGLESQRKYR 273
Query: 153 PRVHLVKVGTDLRRIMTYPFPETQFIAVTAYQNEEVTSLKIKYNPFAKAFLDAKERPE 210
++ + + R + FPET+F+ VT YQN E+ LKI NP+AKAF + P+
Sbjct: 274 LQLVITSLAPRCERWF-FDFPETEFMTVTCYQNPEIRKLKIANNPYAKAFRSNRSTPK 330
>SB_47746| Best HMM Match : T-box (HMM E-Value=1.8e-23)
Length = 390
Score = 106 bits (254), Expect = 4e-23
Identities = 67/187 (35%), Positives = 96/187 (51%), Gaps = 24/187 (12%)
Query: 30 ALDDRELWVRFQTLTNEMIVTKNGRRMFPVVKVTASGLDPTAMYTVLLEFVQVDSHRWKY 89
AL ELW +F EM++T+ GR T L + W
Sbjct: 147 ALQQSELWWKFYACGTEMVITRTGRL--------------TIYLQRFLRKLTTKIDTWNT 192
Query: 90 VNGEWVPGGKAEVPP--SNAIYIHPESPNFGAHWMKEPISFAKVKLTNKTNGN---GQIM 144
+ VP +A VP S+ Y ++ + G +WMK + F K++LTN+ G+ G++
Sbjct: 193 TD---VPDARAVVPRDGSSQSYRAEDTVHTGLYWMKNGVDFKKIRLTNRRTGSFKEGELH 249
Query: 145 LNSLHKYEPRVHLVKVGTDLRRIM--TYPFPETQFIAVTAYQNEEVTSLKIKYNPFAKAF 202
L+ KY+PR+H+V+ + ++ TY FPET FIAVT YQNEE+ LKI +NPFAK F
Sbjct: 250 LSPNRKYQPRIHIVEETEEGVKVSCSTYVFPETAFIAVTTYQNEELIQLKIDHNPFAKGF 309
Query: 203 LDAKERP 209
D RP
Sbjct: 310 RDKGTRP 316
>SB_45684| Best HMM Match : T-box (HMM E-Value=1.5e-32)
Length = 337
Score = 94.3 bits (224), Expect = 2e-19
Identities = 43/90 (47%), Positives = 58/90 (64%), Gaps = 2/90 (2%)
Query: 31 LDDRELWVRFQTLTNEMIVTKNGRRMFPVVKVTASGLDPTAMYTVLLEFVQVDSHRWKYV 90
L+ RELW RF L EMI+TK GRRMFP ++++ SG+ P A Y VLL+ V VD R++Y
Sbjct: 186 LEGRELWERFSELGTEMIITKAGRRMFPTLRISVSGVQPKANYMVLLDIVPVDDKRYRYA 245
Query: 91 --NGEWVPGGKAEVPPSNAIYIHPESPNFG 118
W+ GKA+ P +Y+HP+SP G
Sbjct: 246 YHRSTWLVAGKADPPAPVRLYMHPDSPFTG 275
>SB_17249| Best HMM Match : T-box (HMM E-Value=4.8e-11)
Length = 152
Score = 67.7 bits (158), Expect = 2e-11
Identities = 29/69 (42%), Positives = 41/69 (59%)
Query: 48 IVTKNGRRMFPVVKVTASGLDPTAMYTVLLEFVQVDSHRWKYVNGEWVPGGKAEVPPSNA 107
++ RRMFP +K SGLDP A Y LL+ + D R+K+ N W+ GKA+
Sbjct: 82 VLPTTDRRMFPPIKARISGLDPRAKYFFLLDIIPADDCRYKFHNCRWMVAGKADPELDKP 141
Query: 108 IYIHPESPN 116
+YIHP+SP+
Sbjct: 142 LYIHPDSPS 150
>SB_56920| Best HMM Match : T-box (HMM E-Value=2.9e-13)
Length = 263
Score = 57.2 bits (132), Expect = 3e-08
Identities = 29/53 (54%), Positives = 36/53 (67%), Gaps = 6/53 (11%)
Query: 142 QIMLNSLHKYEPRVHLVKVGTD------LRRIMTYPFPETQFIAVTAYQNEEV 188
+I+LNS+HKY+PRVHL+K D L T+ FPET F+AVTAYQN V
Sbjct: 195 RIILNSMHKYQPRVHLLKNPADTNYEGQLEEAQTFVFPETAFMAVTAYQNHLV 247
Score = 32.3 bits (70), Expect = 0.86
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 31 LDDRELWVRFQTLTNEMIVTKNGR 54
L+ RELW F L EMI+TK+GR
Sbjct: 75 LEGRELWQCFYRLGTEMIITKSGR 98
>SB_11975| Best HMM Match : T-box (HMM E-Value=2.8e-06)
Length = 122
Score = 43.2 bits (97), Expect = 5e-04
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 11/61 (18%)
Query: 138 NGNGQ-IMLNSLHKYEPRVHLVK------VGTDLRR----IMTYPFPETQFIAVTAYQNE 186
+G+G I+L+S+HKY+PR+H+++ D+ R T+ F ET F VTAYQN+
Sbjct: 62 DGDGVGIILHSMHKYQPRIHIIRKKDTSEASIDIDRPCSERKTFTFSETVFTTVTAYQNQ 121
Query: 187 E 187
+
Sbjct: 122 Q 122
>SB_17271| Best HMM Match : Ank (HMM E-Value=1.7e-10)
Length = 548
Score = 32.3 bits (70), Expect = 0.86
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 88 KYVNGEWVPGGKAEVPPSNAIYIHPESPNFGAHWMKEPISFAKVKLT 134
KY+N ++PG +A +PP + H S ++ + ++EP++ +K T
Sbjct: 259 KYLNANYLPGFEAALPP---VQKHSSSKSYTENLVQEPVAIEPLKRT 302
>SB_22789| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 30.7 bits (66), Expect = 2.6
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 435 GQDHSTSDREYKFSTDETRHSPCEESSIPPRSPA 468
G H+T +REY S R +P +SS PR+P+
Sbjct: 205 GTAHTTIEREYATSEAYVRRAPGSQSSEGPRTPS 238
>SB_43399| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 29.9 bits (64), Expect = 4.6
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 137 TNGNGQIMLNSLHKYEPRVHLVKVGTDLRRIMTYPFPETQFIAVTAYQNEEVTSLKIKYN 196
T+GNG I L + L+ +R++MTY P T +TA+ + +TS + +
Sbjct: 759 TDGNGAIARTILFDFRKAFDLIDHHILVRKLMTYDLPST----ITAWIVDFLTSRRQRVK 814
Query: 197 PFAKAFLDAKERPEGYYQRDFVG 219
+ + P G QR +G
Sbjct: 815 LCQDCYSEWGTIPSGVPQRTKLG 837
>SB_207| Best HMM Match : RVT_1 (HMM E-Value=7.4e-06)
Length = 773
Score = 29.9 bits (64), Expect = 4.6
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 137 TNGNGQIMLNSLHKYEPRVHLVKVGTDLRRIMTYPFPETQFIAVTAYQNEEVTSLKIKYN 196
T+GNG I L + L+ +R++MTY P T +TA+ + +TS + +
Sbjct: 470 TDGNGAIARTILFDFRKAFDLIDHHILVRKLMTYDLPST----ITAWIVDFLTSRRQRVK 525
Query: 197 PFAKAFLDAKERPEGYYQRDFVG 219
+ + P G QR +G
Sbjct: 526 LCQDCYSEWGTIPSGVPQRTKLG 548
>SB_39268| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 580
Score = 29.5 bits (63), Expect = 6.1
Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 75 VLLEFVQVDSHRWKYVNGEWVPGGKAEVPPSNAIYIHPESPNFGAHW--MKEPISFAKVK 132
V+L VQ DS Y+N W+ G K E I P++ W M E S V
Sbjct: 344 VILSSVQGDSESTDYINANWIDGFKQE--KKYIATIGPKAETTSDFWRMMWEHKSSIVVM 401
Query: 133 LTNKTNGNGQIMLNSLHKYEP 153
LT K G++ HKY P
Sbjct: 402 LT-KLVEKGKV---KCHKYWP 418
>SB_21646| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 29.5 bits (63), Expect = 6.1
Identities = 19/72 (26%), Positives = 25/72 (34%)
Query: 394 QPSEYVGTGEAAYSTEGMQFGPTGPALEAAGHSAEGRASPSGQDHSTSDREYKFSTDETR 453
QP GE E G TGP + +G A PSG D + K D
Sbjct: 99 QPGPQGEKGETGPQGEQGPKGDTGPQGQPGPEGPQGPAGPSGADGPQGPEDLKAHPDPLE 158
Query: 454 HSPCEESSIPPR 465
P ++P +
Sbjct: 159 KVPHHLRNLPDK 170
>SB_3463| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 537
Score = 29.5 bits (63), Expect = 6.1
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 428 EGRASPSGQDHSTSDREYKFSTDETRHSP 456
EG+ SGQD S DR + TDET H P
Sbjct: 472 EGKLYRSGQDRSAIDRAF---TDETGHDP 497
>SB_1431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1748
Score = 29.5 bits (63), Expect = 6.1
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 418 PALEAAGHSAEGRASPSGQDHSTSDREYKFSTDETRHSP 456
P +G + EG+ SGQD + DR + TDET + P
Sbjct: 1034 PEARGSGFTHEGKLHRSGQDGAAIDRAF---TDETGYDP 1069
>SB_42687| Best HMM Match : UPF0262 (HMM E-Value=2.1)
Length = 908
Score = 29.1 bits (62), Expect = 8.0
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 415 PTGPALEAAG---HSAEGRASPSGQDHSTSDREYKFSTDETRHSP 456
P P E G H EG+ SG+D DR + TDET H P
Sbjct: 123 PLVPITEEEGRSEHKIEGKLYRSGRDRVAIDRAF---TDETGHDP 164
>SB_18561| Best HMM Match : Anti-silence (HMM E-Value=0)
Length = 170
Score = 29.1 bits (62), Expect = 8.0
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 167 IMTYPFPETQFIAVTAYQNEEVTSLKIKYNPFAKAFLDAKERPE 210
++T + E +F+ V Y N E + ++K NP +K ++ K + E
Sbjct: 96 LLTCSYREREFVRVGYYVNNEYNNEEMKENPPSKPVIEMKCKDE 139
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.314 0.132 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,713,256
Number of Sequences: 59808
Number of extensions: 463376
Number of successful extensions: 760
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 714
Number of HSP's gapped (non-prelim): 29
length of query: 469
length of database: 16,821,457
effective HSP length: 85
effective length of query: 384
effective length of database: 11,737,777
effective search space: 4507306368
effective search space used: 4507306368
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 62 (29.1 bits)
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