Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000322-TA|BGIBMGA000322-PA|IPR001699|Transcription
factor, T-box, IPR008967|p53-like transcription factor, DNA-binding,
IPR002070|Transcription factor, Brachyury
(469 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U11279-3|AAF99909.1| 423|Caenorhabditis elegans T box family pr... 190 2e-48
AF025459-2|AAB70985.1| 252|Caenorhabditis elegans Mesodermal li... 179 4e-45
U56081-1|AAB37243.1| 346|Caenorhabditis elegans T-BOX 12 protein. 176 3e-44
AJ252168-1|CAB65731.1| 346|Caenorhabditis elegans T-box DNA bin... 176 3e-44
AF025468-3|AAF02176.1| 346|Caenorhabditis elegans Male abnormal... 176 3e-44
U50193-7|AAL11479.1| 327|Caenorhabditis elegans T box family pr... 175 7e-44
Z29443-10|CAA82578.2| 315|Caenorhabditis elegans Hypothetical p... 138 6e-33
AB121091-1|BAD14918.1| 315|Caenorhabditis elegans T-box transcr... 138 6e-33
Z29443-9|CAA82575.2| 292|Caenorhabditis elegans Hypothetical pr... 134 2e-31
AB019521-1|BAC66463.1| 292|Caenorhabditis elegans T-box transcr... 134 2e-31
AL117202-9|CAB57892.1| 352|Caenorhabditis elegans Hypothetical ... 126 3e-29
Z81475-3|CAB03909.1| 303|Caenorhabditis elegans Hypothetical pr... 109 4e-24
U21310-2|AAA62521.1| 322|Caenorhabditis elegans T box family pr... 98 1e-20
AC024788-4|ABE73331.1| 305|Caenorhabditis elegans Hypothetical ... 90 4e-18
AL132862-11|CAB60541.1| 396|Caenorhabditis elegans Hypothetical... 71 2e-12
AL132862-12|CAB60542.1| 380|Caenorhabditis elegans Hypothetical... 69 7e-12
U21321-10|AAG00048.2| 325|Caenorhabditis elegans T box family p... 63 4e-10
AL117202-7|CAB55070.1| 302|Caenorhabditis elegans Hypothetical ... 63 4e-10
AF000261-8|AAB52929.1| 376|Caenorhabditis elegans T box family ... 61 1e-09
AC024839-3|AAF60829.1| 308|Caenorhabditis elegans T box family ... 60 2e-09
AC024839-2|AAF60830.1| 308|Caenorhabditis elegans Hypothetical ... 60 2e-09
AL590342-5|CAC35862.1| 507|Caenorhabditis elegans Hypothetical ... 46 4e-05
AL032627-24|CAA21552.1| 507|Caenorhabditis elegans Hypothetical... 46 4e-05
AL032622-8|CAA21503.1| 507|Caenorhabditis elegans Y66A7A.8 prot... 46 4e-05
Z73899-3|CAA98075.1| 331|Caenorhabditis elegans Hypothetical pr... 44 2e-04
U41017-8|AAC48210.1| 233|Caenorhabditis elegans T box family pr... 43 5e-04
Z71262-8|CAA95812.1| 302|Caenorhabditis elegans Hypothetical pr... 33 0.57
Z81554-1|CAB04506.1| 838|Caenorhabditis elegans Hypothetical pr... 31 2.3
>U11279-3|AAF99909.1| 423|Caenorhabditis elegans T box family
protein 2 protein.
Length = 423
Score = 190 bits (462), Expect = 2e-48
Identities = 89/181 (49%), Positives = 124/181 (68%), Gaps = 7/181 (3%)
Query: 31 LDDRELWVRFQTLTNEMIVTKNGRRMFPVVKVTASGLDPTAMYTVLLEFVQVDSHRWKYV 90
LD+RELW +F EM++TK+GRR+FP +V SGLD + Y V+++ V D HR+K+
Sbjct: 65 LDERELWQQFSQCGTEMVITKSGRRIFPAYRVKISGLDKKSQYFVMMDLVPADEHRYKFN 124
Query: 91 NGEWVPGGKAEVPPSNAIYIHPESPNFGAHWMKEPISFAKVKLTNK-TNGNGQIMLNSLH 149
N W+ GKA+ +YIHP+SP+ G HWM + +F K+KLTN ++ +G +LNS+H
Sbjct: 125 NSRWMIAGKADPEMPKTLYIHPDSPSTGEHWMSKGANFHKLKLTNNISDKHGYTILNSMH 184
Query: 150 KYEPRVHLVKVGTDLRRIM-----TYPFPETQFIAVTAYQNEEVTSLKIKYNPFAKAFLD 204
KY+PR+H+V+ D +M T+ F ET+FIAVTAYQNE+VT LKI+ NPFAK F D
Sbjct: 185 KYQPRLHVVRC-ADRHNLMYSTFRTFVFRETEFIAVTAYQNEKVTELKIENNPFAKGFRD 243
Query: 205 A 205
A
Sbjct: 244 A 244
>AF025459-2|AAB70985.1| 252|Caenorhabditis elegans Mesodermal
lineage specificationprotein 1 protein.
Length = 252
Score = 179 bits (435), Expect = 4e-45
Identities = 84/179 (46%), Positives = 119/179 (66%), Gaps = 4/179 (2%)
Query: 31 LDDRELWVRFQTLTNEMIVTKNGRRMFPVVKVTASGLDPTAMYTVL--LEFVQVDSHRWK 88
L LW RF L EMIVTK+GRRMFP + V +GLDP Y V+ LE +++ R+
Sbjct: 35 LQSSNLWRRFHNLGTEMIVTKSGRRMFPTLSVIIAGLDPVKSYVVMVDLECIEMKRFRYS 94
Query: 89 YVNGEWVPGGKAEVPPSNAIYIHPESPNFGAHWMKEPISFAKVKLT-NKTNGNGQIMLNS 147
+ +W+ G E + +++H +SP GAHWM+ P+SF K+KLT N+ + NG I++NS
Sbjct: 95 FHQSKWISTGPGESELPSRMFVHTDSPARGAHWMRAPVSFDKMKLTNNQLDNNGHIIVNS 154
Query: 148 LHKYEPRVHLVKVGTDLRRIMTYPFPETQFIAVTAYQNEEVTSLKIKYNPFAKAFLDAK 206
+HKY PRVH+++ D ++ T+ F ET+FIAVTAYQN +TSLKI+ NPFAK F + +
Sbjct: 155 MHKYRPRVHIIE-QDDSQKRHTFSFEETEFIAVTAYQNHRITSLKIESNPFAKGFRECE 212
>U56081-1|AAB37243.1| 346|Caenorhabditis elegans T-BOX 12 protein.
Length = 346
Score = 176 bits (428), Expect = 3e-44
Identities = 92/199 (46%), Positives = 123/199 (61%), Gaps = 14/199 (7%)
Query: 31 LDDRELWVRFQTLTNEMIVTKNGRRMFPVVKVTASGLDPTAMYTVLLEFVQVDSHRWKYV 90
L+ ELW +F L EMI+TK+GRRMFP VKV+ + + A+Y + L+ V VDS R++Y+
Sbjct: 81 LEGSELWAKFFDLGTEMIITKSGRRMFPTVKVSFTNVILDALYYIFLDVVPVDSKRYRYI 140
Query: 91 --NGEWVPGGKAEVPPSNAIYIHPESPNFGAHWMKEPISFAKVKLT-NKTNGNGQIMLNS 147
W+ GKAE P N Y+HP+SP G +K ISF K KLT N+ + G ++LNS
Sbjct: 141 YNKSAWLTAGKAEPVPKNRYYLHPDSPFTGDQLLKHVISFEKTKLTNNEVDKTGHLILNS 200
Query: 148 LHKYEPRVHLV-----------KVGTDLRRIMTYPFPETQFIAVTAYQNEEVTSLKIKYN 196
+HKY+PR+H+V KV + TY FPETQF+AVTAYQN+ +T LKI+ N
Sbjct: 201 MHKYQPRIHIVQRQKANPLDPNKVVMSEEKHCTYTFPETQFMAVTAYQNQLITKLKIEKN 260
Query: 197 PFAKAFLDAKERPEGYYQR 215
PFAK F D R +R
Sbjct: 261 PFAKGFRDPTGRSPDEMER 279
>AJ252168-1|CAB65731.1| 346|Caenorhabditis elegans T-box DNA
binding protein protein.
Length = 346
Score = 176 bits (428), Expect = 3e-44
Identities = 92/199 (46%), Positives = 123/199 (61%), Gaps = 14/199 (7%)
Query: 31 LDDRELWVRFQTLTNEMIVTKNGRRMFPVVKVTASGLDPTAMYTVLLEFVQVDSHRWKYV 90
L+ ELW +F L EMI+TK+GRRMFP VKV+ + + A+Y + L+ V VDS R++Y+
Sbjct: 81 LEGSELWAKFFDLGTEMIITKSGRRMFPTVKVSFTNVILDALYYIFLDVVPVDSKRYRYI 140
Query: 91 --NGEWVPGGKAEVPPSNAIYIHPESPNFGAHWMKEPISFAKVKLT-NKTNGNGQIMLNS 147
W+ GKAE P N Y+HP+SP G +K ISF K KLT N+ + G ++LNS
Sbjct: 141 YNKSAWLTAGKAEPVPKNRYYLHPDSPFTGDQLLKHVISFEKTKLTNNEVDKTGHLILNS 200
Query: 148 LHKYEPRVHLV-----------KVGTDLRRIMTYPFPETQFIAVTAYQNEEVTSLKIKYN 196
+HKY+PR+H+V KV + TY FPETQF+AVTAYQN+ +T LKI+ N
Sbjct: 201 MHKYQPRIHIVQRQKANPLDPNKVVMSEEKHCTYTFPETQFMAVTAYQNQLITKLKIEKN 260
Query: 197 PFAKAFLDAKERPEGYYQR 215
PFAK F D R +R
Sbjct: 261 PFAKGFRDPTGRSPDEMER 279
>AF025468-3|AAF02176.1| 346|Caenorhabditis elegans Male abnormal
protein 9 protein.
Length = 346
Score = 176 bits (428), Expect = 3e-44
Identities = 92/199 (46%), Positives = 123/199 (61%), Gaps = 14/199 (7%)
Query: 31 LDDRELWVRFQTLTNEMIVTKNGRRMFPVVKVTASGLDPTAMYTVLLEFVQVDSHRWKYV 90
L+ ELW +F L EMI+TK+GRRMFP VKV+ + + A+Y + L+ V VDS R++Y+
Sbjct: 81 LEGSELWAKFFDLGTEMIITKSGRRMFPTVKVSFTNVILDALYYIFLDVVPVDSKRYRYI 140
Query: 91 --NGEWVPGGKAEVPPSNAIYIHPESPNFGAHWMKEPISFAKVKLT-NKTNGNGQIMLNS 147
W+ GKAE P N Y+HP+SP G +K ISF K KLT N+ + G ++LNS
Sbjct: 141 YNKSAWLTAGKAEPVPKNRYYLHPDSPFTGDQLLKHVISFEKTKLTNNEVDKTGHLILNS 200
Query: 148 LHKYEPRVHLV-----------KVGTDLRRIMTYPFPETQFIAVTAYQNEEVTSLKIKYN 196
+HKY+PR+H+V KV + TY FPETQF+AVTAYQN+ +T LKI+ N
Sbjct: 201 MHKYQPRIHIVQRQKANPLDPNKVVMSEEKHCTYTFPETQFMAVTAYQNQLITKLKIEKN 260
Query: 197 PFAKAFLDAKERPEGYYQR 215
PFAK F D R +R
Sbjct: 261 PFAKGFRDPTGRSPDEMER 279
>U50193-7|AAL11479.1| 327|Caenorhabditis elegans T box family
protein 7 protein.
Length = 327
Score = 175 bits (425), Expect = 7e-44
Identities = 82/177 (46%), Positives = 111/177 (62%), Gaps = 5/177 (2%)
Query: 31 LDDRELWVRFQTLTNEMIVTKNGRRMFPVVKVTASGLDPTAMYTVLLEFVQVDSHRWKYV 90
L +R LW F EMI+TK GRRMFP+VK+ SGLD + YT+++E + VD R+K+
Sbjct: 60 LVNRNLWSTFLECGTEMIITKKGRRMFPLVKLKLSGLDKNSNYTIIMEMISVDKLRYKFW 119
Query: 91 NGEWVPGGKAEVPPSNAIYIHPESPNFGAHWMKEPISFAKVKLTNKT-NGNGQIMLNSLH 149
NG W+ G E P ++HP+SP G WM + + F KL+N N +G I+LNS+H
Sbjct: 120 NGNWIVAGVGEHHPLPTCFVHPQSPRSGEWWMTDGVDFKMAKLSNNPFNNDGHIVLNSMH 179
Query: 150 KYEPRVHLVKVGTD----LRRIMTYPFPETQFIAVTAYQNEEVTSLKIKYNPFAKAF 202
+Y PR H+V+ + L + T+ F ET+FIAVTAYQN+ VT KI NPFAK F
Sbjct: 180 RYNPRFHIVRADSSGQPILASLKTFSFKETEFIAVTAYQNDVVTKCKIDNNPFAKGF 236
>Z29443-10|CAA82578.2| 315|Caenorhabditis elegans Hypothetical
protein T07C4.2 protein.
Length = 315
Score = 138 bits (335), Expect = 6e-33
Identities = 72/187 (38%), Positives = 103/187 (55%), Gaps = 11/187 (5%)
Query: 32 DDRELWVRFQTLTNEMIVTKNGRRMFPVVKVTASGLDPTAMYTVLLEFVQVDSHRWKYVN 91
D +LW F NEMIVTK+GR+MFP ++ GL P +Y ++L D HR+K+ +
Sbjct: 12 DQDKLWNLFHYHKNEMIVTKSGRKMFPKLEYVVRGLTPNKLYAMMLHIEPSDDHRYKFSS 71
Query: 92 GEWVPGGKAEVPPSNAIYIHPESPNFGAHWMKEPISFAKVKLTN--KTNGNGQIMLNSLH 149
GEWV GKAE H + G WM P+ F +VK+TN ++ I L+S+H
Sbjct: 72 GEWVKSGKAEKHREPKKLWHADGVRSGKEWMTNPVCFDRVKITNCAESTNASMIFLHSMH 131
Query: 150 KYEPRVHLVKVGTD---------LRRIMTYPFPETQFIAVTAYQNEEVTSLKIKYNPFAK 200
KY P + + + ++ R + + T+FIAVTAYQN+ V LKIK+NPFAK
Sbjct: 132 KYTPVMSIYESPSESPFSVPQPSTRLVTSVRLTYTEFIAVTAYQNDAVIKLKIKFNPFAK 191
Query: 201 AFLDAKE 207
F + +
Sbjct: 192 GFREGSQ 198
>AB121091-1|BAD14918.1| 315|Caenorhabditis elegans T-box
transcription factor TBX-8 protein.
Length = 315
Score = 138 bits (335), Expect = 6e-33
Identities = 72/187 (38%), Positives = 103/187 (55%), Gaps = 11/187 (5%)
Query: 32 DDRELWVRFQTLTNEMIVTKNGRRMFPVVKVTASGLDPTAMYTVLLEFVQVDSHRWKYVN 91
D +LW F NEMIVTK+GR+MFP ++ GL P +Y ++L D HR+K+ +
Sbjct: 12 DQDKLWNLFHYHKNEMIVTKSGRKMFPKLEYVVRGLTPNKLYAMMLHIEPSDDHRYKFSS 71
Query: 92 GEWVPGGKAEVPPSNAIYIHPESPNFGAHWMKEPISFAKVKLTN--KTNGNGQIMLNSLH 149
GEWV GKAE H + G WM P+ F +VK+TN ++ I L+S+H
Sbjct: 72 GEWVKSGKAEKHREPKKLWHADGVRSGKEWMTNPVCFDRVKITNCAESTNASMIFLHSMH 131
Query: 150 KYEPRVHLVKVGTD---------LRRIMTYPFPETQFIAVTAYQNEEVTSLKIKYNPFAK 200
KY P + + + ++ R + + T+FIAVTAYQN+ V LKIK+NPFAK
Sbjct: 132 KYTPVMSIYESPSESPFSVPQPSTRLVTSVRLTYTEFIAVTAYQNDAVIKLKIKFNPFAK 191
Query: 201 AFLDAKE 207
F + +
Sbjct: 192 GFREGSQ 198
>Z29443-9|CAA82575.2| 292|Caenorhabditis elegans Hypothetical
protein T07C4.6 protein.
Length = 292
Score = 134 bits (323), Expect = 2e-31
Identities = 71/180 (39%), Positives = 102/180 (56%), Gaps = 11/180 (6%)
Query: 36 LWVRFQTLTNEMIVTKNGRRMFPVVKVTASGLDPTAMYTVLLEFVQVDSHRWKYVNGEWV 95
LW F NEMIVTKNGR++FP ++ GLD +Y ++L+ V R+K+ G+W
Sbjct: 15 LWKIFHAEVNEMIVTKNGRKLFPKLEYIVEGLDENKLYAIMLQLQPVGESRFKFSGGKWQ 74
Query: 96 PGGKAEVPPSNAIYIHPESPNFGAHWMKEPISFAKVKLTN--KTNGNGQIMLNSLHKYEP 153
GKAE H + G+ WM I F +VK++N ++N I LNS+HKY P
Sbjct: 75 ETGKAEKQVDAKKMWHADGVRKGSDWMWSSICFDRVKISNYSESNNASMIYLNSMHKYIP 134
Query: 154 RVHLVKVGTDL---------RRIMTYPFPETQFIAVTAYQNEEVTSLKIKYNPFAKAFLD 204
+ + + ++ + + T FP T+FIAVTAYQN+++T LKIK+N FAK F D
Sbjct: 135 VLTIYESPSESPFCVPQSSNQIVATAKFPHTEFIAVTAYQNQKITDLKIKHNSFAKGFRD 194
>AB019521-1|BAC66463.1| 292|Caenorhabditis elegans T-box
transcription factor TBX-9 protein.
Length = 292
Score = 134 bits (323), Expect = 2e-31
Identities = 71/180 (39%), Positives = 102/180 (56%), Gaps = 11/180 (6%)
Query: 36 LWVRFQTLTNEMIVTKNGRRMFPVVKVTASGLDPTAMYTVLLEFVQVDSHRWKYVNGEWV 95
LW F NEMIVTKNGR++FP ++ GLD +Y ++L+ V R+K+ G+W
Sbjct: 15 LWKIFHAEVNEMIVTKNGRKLFPKLEYIVEGLDENKLYAIMLQLQPVGESRFKFSGGKWQ 74
Query: 96 PGGKAEVPPSNAIYIHPESPNFGAHWMKEPISFAKVKLTN--KTNGNGQIMLNSLHKYEP 153
GKAE H + G+ WM I F +VK++N ++N I LNS+HKY P
Sbjct: 75 ETGKAEKQVDAKKMWHADGVRKGSDWMWSSICFDRVKISNYSESNNASMIYLNSMHKYIP 134
Query: 154 RVHLVKVGTDL---------RRIMTYPFPETQFIAVTAYQNEEVTSLKIKYNPFAKAFLD 204
+ + + ++ + + T FP T+FIAVTAYQN+++T LKIK+N FAK F D
Sbjct: 135 VLTIYESPSESPFCVPQSSNQIVATAKFPHTEFIAVTAYQNQKITDLKIKHNSFAKGFRD 194
>AL117202-9|CAB57892.1| 352|Caenorhabditis elegans Hypothetical
protein Y47D3A.12 protein.
Length = 352
Score = 126 bits (304), Expect = 3e-29
Identities = 67/182 (36%), Positives = 98/182 (53%), Gaps = 10/182 (5%)
Query: 30 ALDDRELWVRFQTLTNEMIVTKNGRRMFPVVKVTASGLDPTAMYTVLLEFVQVDSHRWKY 89
+L+ E+W +F T ++ K GR +FP + GLDP ++Y++ + +VD ++K+
Sbjct: 52 SLNKPEIWEKFYPKTEMIVTRKRGRVIFPHLDYNVKGLDPDSLYSIYIHLERVDGIKYKF 111
Query: 90 VNGEWVPGGKAEVPPSNAIYIHPESPNFGAHWMKEPISFAKVKLTNKTNGNGQ--IMLNS 147
GEW GK + HP G WM EP+SFA +K+TN Q I+ S
Sbjct: 112 DAGEWKEAGKGDPILPIQYKEHPRGKRTGTEWMSEPVSFAHLKITNDPENKDQKLILAQS 171
Query: 148 LHKYEPRVHLVKV----GT---DLRRIMTYPFPETQFIAVTAYQNEEVTSLKIKYNPFAK 200
LHKY P +H+ ++ GT D + + TQFI VTAYQNEE+T LK+ +N FA
Sbjct: 172 LHKYIPVLHIKQLDPYKGTFQMDFHGV-EFRLEATQFIVVTAYQNEELTKLKVHHNKFAS 230
Query: 201 AF 202
F
Sbjct: 231 GF 232
>Z81475-3|CAB03909.1| 303|Caenorhabditis elegans Hypothetical
protein C24H11.3 protein.
Length = 303
Score = 109 bits (262), Expect = 4e-24
Identities = 65/182 (35%), Positives = 98/182 (53%), Gaps = 10/182 (5%)
Query: 30 ALDDRELWVRFQTLTNEMIVTKN-GRRMFPVVKVTASGLDPTAMYTVLLEFVQVDSHRWK 88
+L E+W F T EMIVT+N GR +FP + GLDP ++Y++ + +VD ++K
Sbjct: 13 SLSTPEIWEEFYPKT-EMIVTRNRGRVIFPHLDYIIKGLDPGSLYSIYIHLERVDGIKYK 71
Query: 89 YVNGEWVPGGKAEVPPSNAIYIHPESPNFGAHWMKEPISFAKVKLTNKTNGNGQ--IMLN 146
+ GEW K + HP GA WM EP+SFA +K+TN Q I++
Sbjct: 72 FDAGEWKEFAKGDPILPIQYKEHPRGKRTGAEWMSEPVSFAHIKITNNPEIKDQKVILVQ 131
Query: 147 SLHKYEPRVHLVKV---GTDLRRIMT---YPFPETQFIAVTAYQNEEVTSLKIKYNPFAK 200
S+HK+ P V + +V T + + + T+F+ VTAYQNE + +LK+ +N FA
Sbjct: 132 SMHKHIPVVTVKQVRHYKTGYQEDFSGEQFRLEATEFMVVTAYQNEILKNLKVHHNKFAS 191
Query: 201 AF 202
F
Sbjct: 192 GF 193
>U21310-2|AAA62521.1| 322|Caenorhabditis elegans T box family
protein 11 protein.
Length = 322
Score = 97.9 bits (233), Expect = 1e-20
Identities = 56/169 (33%), Positives = 89/169 (52%), Gaps = 9/169 (5%)
Query: 36 LWVRFQTLTNEMIVTKNGRRMFPVVKVTASGLDPTAMYTVLLEFVQVDSHRWKYVNGEWV 95
LW NEM++T NGRR+FP ++ T +GLD +Y++ + VD + ++ G+W
Sbjct: 16 LWRSCHEYDNEMVITVNGRRIFPTLEYTVTGLDTFKLYSMCMHLDLVDDKKLRFTGGQWA 75
Query: 96 PGGKAE-VPPSNAIYIHPESPNFGAHWMKEPISFAKVKLTN---KTNGNGQ-IMLNSLHK 150
E P ++ H S G WM +SF ++++TN K +GN + L + H+
Sbjct: 76 ESVSTEKKDPPRKVWHHNGSQT-GKDWMLRNVSFDQIRITNRKSKEDGNASYVHLLTQHR 134
Query: 151 YEPRVHLVKVGTDLRRIMTYPFPETQFIAVTAYQNEEVTSLKIKYNPFA 199
Y P V + G L + T P +QFI+VTAY E+ +LK NP++
Sbjct: 135 YIP-VLTIYEGDQL--VHTARIPHSQFISVTAYHKGELNTLKTNNNPYS 180
>AC024788-4|ABE73331.1| 305|Caenorhabditis elegans Hypothetical
protein Y46E12A.4 protein.
Length = 305
Score = 89.8 bits (213), Expect = 4e-18
Identities = 54/183 (29%), Positives = 95/183 (51%), Gaps = 11/183 (6%)
Query: 30 ALDDRELWVRFQTLTNEMIVTKNGRRMFPVVKVTASGLDPTAMYTVLLEFVQVDSHRWKY 89
AL ++ LW F + NEMI+TK GR +FP+++ GL Y + + + + K+
Sbjct: 6 ALMEKSLWREFDSQCNEMIITKIGRNLFPILEFAFKGLCEHLNYKIGVTMEPISYQKLKF 65
Query: 90 VNGEWVP-GGKAEVPPSNAIYIHPESPNFGAHWMKEPISFAKVKLTNKTN----GNGQIM 144
G W + E+ N +++ G ++ + K+KLTN + + I
Sbjct: 66 TAGRWESLDIQEEMVQPNEVFLMKS----GRELLQRGLKLEKLKLTNSKDALQKSDQMIR 121
Query: 145 LNSLHKYEPRVHLVKVGT--DLRRIMTYPFPETQFIAVTAYQNEEVTSLKIKYNPFAKAF 202
+ S+ +Y P +++ ++ +I + FPET+FIAVTAYQ+E V LK++ N FA+ F
Sbjct: 122 VQSMRQYMPVLNIYEISPVGAHNQIGKFQFPETKFIAVTAYQSELVKQLKVQKNKFAQGF 181
Query: 203 LDA 205
++
Sbjct: 182 RES 184
>AL132862-11|CAB60541.1| 396|Caenorhabditis elegans Hypothetical
protein Y73F8A.16 protein.
Length = 396
Score = 70.5 bits (165), Expect = 2e-12
Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 7/158 (4%)
Query: 46 EMIVTKNGRRM-FPVVKVTASGLDPTAMYTVLLEFVQVDSHRWKYVNGEWVPGGKAEVPP 104
EMIV G ++ FP + +GL+ + Y VLL + D+ R+ Y NG+W P
Sbjct: 25 EMIVNNKGPKLIFPELNFNITGLEEKSRYVVLLSIEKYDNIRYGYRNGKWGPSKVRHATK 84
Query: 105 SN---AIYIHPESPNFGAHWMKEPISFAKVKLTNK---TNGNGQIMLNSLHKYEPRVHLV 158
++HP+ G MKE I F V++TN + + + ++HKY P + +
Sbjct: 85 KEQEIKYFLHPDGTKLGKELMKETIKFDTVRITNHKKFMDKDNVFFVETMHKYVPVLTVK 144
Query: 159 KVGTDLRRIMTYPFPETQFIAVTAYQNEEVTSLKIKYN 196
+ + QF VT Y E + + K K++
Sbjct: 145 NITNVESANHSMRMEVAQFFPVTVYNQESIGNWKSKFH 182
>AL132862-12|CAB60542.1| 380|Caenorhabditis elegans Hypothetical
protein Y73F8A.17 protein.
Length = 380
Score = 68.9 bits (161), Expect = 7e-12
Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 7/158 (4%)
Query: 46 EMIVTKNGRR-MFPVVKVTASGLDPTAMYTVLLEFVQVDSHRWKYVNGEWVPGGKAEVPP 104
EMIV G + +FP + +GL+ + Y VLL + D+ R+ + NG+W P
Sbjct: 25 EMIVNNKGPKPIFPELNFNITGLEEKSRYVVLLSIQKFDNIRYGFKNGKWGPSKVRHATK 84
Query: 105 SN---AIYIHPESPNFGAHWMKEPISFAKVKLTNK---TNGNGQIMLNSLHKYEPRVHLV 158
++HP+ G MKE I F V++TN + + + ++HKY P + +
Sbjct: 85 KEQEIKYFLHPDGTKLGEELMKETIKFDTVRITNHKKFMDKDNVFFVETMHKYVPVLTVK 144
Query: 159 KVGTDLRRIMTYPFPETQFIAVTAYQNEEVTSLKIKYN 196
+ + QF VT Y E + + K K++
Sbjct: 145 NITNVESANHSMRMEVAQFFPVTVYNQESIGNWKSKFH 182
>U21321-10|AAG00048.2| 325|Caenorhabditis elegans T box family
protein 35 protein.
Length = 325
Score = 63.3 bits (147), Expect = 4e-10
Identities = 44/180 (24%), Positives = 76/180 (42%), Gaps = 12/180 (6%)
Query: 31 LDDRELWVRFQTLTNEMIVTKNGRRMFPVVKVTASGLDPTAMYTVLLEFVQVDSHRWKY- 89
L + +++ F E +V R FP L+ +Y + L F + ++ R+++
Sbjct: 27 LHNSDVFQLFHPDIMEQVVVNKERVFFPTPSFNVLNLESDCLYKMSLRFDKTNNKRFQFN 86
Query: 90 -VNGEWVPGGKAEVPPSNAIYIHPESPNFGAHWMKEPISFAKVKLTN--KTNGNGQIMLN 146
+W K + +++HP G WMK P+ F +K+TN + + I L
Sbjct: 87 RQTKQWTEYDKVSNHKESEVFVHPSEIRTGDDWMKSPVEFF-IKVTNLRSSESDEVICLE 145
Query: 147 SLHKYEPRVHLVKVGTDLRRIMTYPFPETQ-------FIAVTAYQNEEVTSLKIKYNPFA 199
S KY+P + + KV D P + FIA T Y + + +K NPF+
Sbjct: 146 SQCKYQPTLLIQKVFRDCFGCFQAHGPPVEIKFALLTFIATTRYCSRRIADIKSSLNPFS 205
>AL117202-7|CAB55070.1| 302|Caenorhabditis elegans Hypothetical
protein Y47D3A.10 protein.
Length = 302
Score = 63.3 bits (147), Expect = 4e-10
Identities = 43/151 (28%), Positives = 65/151 (43%), Gaps = 5/151 (3%)
Query: 45 NEMIVTKNGRRMFPVVKVTASGLDPTAMYTVLLEFVQVDSHRWKYVNGEWVP-GGKAEVP 103
NEM+V + G +M P K SGL Y + L D R+ Y N +W P +
Sbjct: 18 NEMLVKRGGVKMIPEPKFVISGLVDNEEYVIKLRIDLADEFRYSYQNQQWTPFAPSTKNS 77
Query: 104 PSNAIYIHPESPNFGAHWMKEPISFAKVKLTNKTNG--NGQIMLNSLHKYEPRVHLVKVG 161
+AI GA W + F K+ +T + N I + HKY P + + V
Sbjct: 78 KLSAITETEHRKETGATWNMRIVQFDKLLITREFNDIQRNVIHVEPNHKYIPVLTIQNVT 137
Query: 162 TDLRRIMTYPFPETQFIAVTAYQNEEVTSLK 192
T + + F + +FIAV +YQ+ + K
Sbjct: 138 TG--KSTEFQFQQMEFIAVKSYQSARIRHTK 166
>AF000261-8|AAB52929.1| 376|Caenorhabditis elegans T box family
protein 18 protein.
Length = 376
Score = 61.3 bits (142), Expect = 1e-09
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 26/194 (13%)
Query: 30 ALDDRELWVRFQTLTNEMIVTKNGRRMFPVVKVTASGLDPTAMYTVLLEFVQVDSHRWKY 89
+L ++E W +F + EM+V +GRR+FP++ SGLDP +Y + + +++ +Y
Sbjct: 170 SLANQEQWAKFHEIGTEMMVFNSGRRLFPLLAYKVSGLDPHKLYCAGVHMIPDSAYKQEY 229
Query: 90 VNG--EWV---PGGKAEVPPSNAIYIHPESPNFGAHWMKEPISFAKVKLTN--------- 135
+ +WV K P++ I E+ G M I + VK+ N
Sbjct: 230 DHDLQQWVNCLNQKKTIFKPTSEILGRIEN---GFKLMSLGIDMSDVKIFNIAIRKKTPL 286
Query: 136 ------KTNGNGQIMLNSLHKYEPRVHLVKV---GTDLRRIMTYPFPETQFIAVTAYQNE 186
K N + I + +KY P + + ++ G + + I FPET F+ V+ Y+N+
Sbjct: 287 QIEKSRKPNLDKTIEVLIQYKYLPVIKIYELSNSGMEKKEIAQATFPETSFVTVSIYRNQ 346
Query: 187 EVTSLKIKYNPFAK 200
++ +K N + +
Sbjct: 347 KIKEMKTLGNKYCR 360
>AC024839-3|AAF60829.1| 308|Caenorhabditis elegans T box family
protein 30 protein.
Length = 308
Score = 60.5 bits (140), Expect = 2e-09
Identities = 44/174 (25%), Positives = 76/174 (43%), Gaps = 10/174 (5%)
Query: 31 LDDRELWV-RFQTLTNEMIV-TKNGRRMFPVVKVTASGLDPTAMYTVLLEFVQVDSHRWK 88
+ + ELW R+ + EMI +K +FP +K SGL+ + Y ++L ++D+ R+
Sbjct: 11 MSNEELWKERYPNM--EMISNSKRITPIFPEIKFKISGLEENSRYVLVLSLEKMDNIRYG 68
Query: 89 Y-VNGEWVPGGKAEVPPSN--AIYIHPESPNFGAHWMKEPISFAKVKLTNK---TNGNGQ 142
N EW P + P + + HPE G M E + F V++T +
Sbjct: 69 INENKEWAPSSARKPKPHHNMKFFFHPEGTKLGKELMAETVEFTSVRITTSEKLSEKENV 128
Query: 143 IMLNSLHKYEPRVHLVKVGTDLRRIMTYPFPETQFIAVTAYQNEEVTSLKIKYN 196
++++HKY P + + + T + QF V+ YQ + K N
Sbjct: 129 FYVHTMHKYVPVLTIRNLTTGEIASNIFKMEIAQFFPVSIYQQASMGRWKSDLN 182
>AC024839-2|AAF60830.1| 308|Caenorhabditis elegans Hypothetical
protein Y59E9AR.5 protein.
Length = 308
Score = 60.5 bits (140), Expect = 2e-09
Identities = 44/174 (25%), Positives = 76/174 (43%), Gaps = 10/174 (5%)
Query: 31 LDDRELWV-RFQTLTNEMIV-TKNGRRMFPVVKVTASGLDPTAMYTVLLEFVQVDSHRWK 88
+ + ELW R+ + EMI +K +FP +K SGL+ + Y ++L ++D+ R+
Sbjct: 11 MSNEELWKERYPNM--EMISNSKRITPIFPEIKFKISGLEENSRYVLVLSLEKMDNIRYG 68
Query: 89 Y-VNGEWVPGGKAEVPPSN--AIYIHPESPNFGAHWMKEPISFAKVKLTNK---TNGNGQ 142
N EW P + P + + HPE G M E + F V++T +
Sbjct: 69 INENKEWAPSSARKPKPHHNMKFFFHPEGTKLGKELMAETVEFTSVRITTSEKLSEKENV 128
Query: 143 IMLNSLHKYEPRVHLVKVGTDLRRIMTYPFPETQFIAVTAYQNEEVTSLKIKYN 196
++++HKY P + + + T + QF V+ YQ + K N
Sbjct: 129 FYVHTMHKYVPVLTIRNLTTGEIASNIFKMEIAQFFPVSIYQQASMGRWKSDLN 182
>AL590342-5|CAC35862.1| 507|Caenorhabditis elegans Hypothetical
protein Y66A7A.8 protein.
Length = 507
Score = 46.4 bits (105), Expect = 4e-05
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 32 DDRELWVRFQTLTNEMIVTKNGRRMFPVVKVTASGLDPTAMYTVLLEFVQVDSHRWKYVN 91
D ++LW L+NE V NGR++FP + L+P + Y V + ++ ++ +Y N
Sbjct: 123 DPQDLWKELHYLSNEQNVLNNGRKIFPALNYKVEHLNPESNYKVEILLRRMVPYQIQYSN 182
Query: 92 GEW 94
G W
Sbjct: 183 GSW 185
>AL032627-24|CAA21552.1| 507|Caenorhabditis elegans Hypothetical
protein Y66A7A.8 protein.
Length = 507
Score = 46.4 bits (105), Expect = 4e-05
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 32 DDRELWVRFQTLTNEMIVTKNGRRMFPVVKVTASGLDPTAMYTVLLEFVQVDSHRWKYVN 91
D ++LW L+NE V NGR++FP + L+P + Y V + ++ ++ +Y N
Sbjct: 123 DPQDLWKELHYLSNEQNVLNNGRKIFPALNYKVEHLNPESNYKVEILLRRMVPYQIQYSN 182
Query: 92 GEW 94
G W
Sbjct: 183 GSW 185
>AL032622-8|CAA21503.1| 507|Caenorhabditis elegans Y66A7A.8
protein.
Length = 507
Score = 46.4 bits (105), Expect = 4e-05
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 32 DDRELWVRFQTLTNEMIVTKNGRRMFPVVKVTASGLDPTAMYTVLLEFVQVDSHRWKYVN 91
D ++LW L+NE V NGR++FP + L+P + Y V + ++ ++ +Y N
Sbjct: 123 DPQDLWKELHYLSNEQNVLNNGRKIFPALNYKVEHLNPESNYKVEILLRRMVPYQIQYSN 182
Query: 92 GEW 94
G W
Sbjct: 183 GSW 185
>Z73899-3|CAA98075.1| 331|Caenorhabditis elegans Hypothetical
protein ZK829.5 protein.
Length = 331
Score = 44.0 bits (99), Expect = 2e-04
Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 13/167 (7%)
Query: 45 NEMIVTKNGRRMFPVVKVTASGLDPTAMYTVLLEFVQVDSHRWKYVN--GEWVPGGKAEV 102
+E++V K+ R++FP K + GLDP +Y+V + F + + Y +W+P
Sbjct: 42 HEVVVYKDCRKLFPAAKFSVRGLDPALLYSVEICFDVLSPFTFSYNKKLEKWIPTKTPVN 101
Query: 103 PPSNAIYIHPESPNFGAHWMKEPISFAKVKLTN-------KTNGNG-QIMLNSLHKYEPR 154
S+A + G +M + F + +T+ K N + L+S Y+ R
Sbjct: 102 CQSSA--LSSMICETGDWFMNGDMDFGALNITSSHEKAKEKIEQNRIAVCLSSRTMYQIR 159
Query: 155 VHLVKVGTD-LRRIMTYPFPETQFIAVTAYQNEEVTSLKIKYNPFAK 200
V L ++ D L + F E FI T Y+ + LK N F++
Sbjct: 160 VVLYEMQNDELIYLKETKFDEMIFITCTEYRGQVNRELKKSMNRFSR 206
>U41017-8|AAC48210.1| 233|Caenorhabditis elegans T box family
protein 41 protein.
Length = 233
Score = 42.7 bits (96), Expect = 5e-04
Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Query: 111 HPESPNFGAHWMKEPISFAKVKLTN--KTNGNGQIMLNSLHKYEPRVHLVKVGTD----- 163
HP GA W ISF +T + N I L K+ P + + +V D
Sbjct: 45 HPAGIKMGALWTSRTISFEDFFITTNPQPTDNSMIHLPPHCKFTPILDVYEVVLDHMQQP 104
Query: 164 --LRRIMTYPFPETQFIAVTAYQNEEVTSLKIKYNPFAKAFL 203
+ R+ + P T F+ VT Y+N E LK+ NP A+ FL
Sbjct: 105 ATMHRVSSCRLPYT-FMTVTMYKNREARVLKLGMNPHARHFL 145
>Z71262-8|CAA95812.1| 302|Caenorhabditis elegans Hypothetical
protein F22D6.10 protein.
Length = 302
Score = 32.7 bits (71), Expect = 0.57
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 414 GPTGPALEAAGHSAEGRASPSGQDHSTSDREYKFSTD 450
GP GP E + +G+A GQD +T EY S D
Sbjct: 98 GPPGPPGEPGENGTDGQAGQDGQDGNTPSEEYGNSQD 134
>Z81554-1|CAB04506.1| 838|Caenorhabditis elegans Hypothetical
protein F57G4.1 protein.
Length = 838
Score = 30.7 bits (66), Expect = 2.3
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 127 SFAKVKLTNKTNGNGQIMLNSLHKYEPRVHLVKVGTDLRRIMTYPFPETQFIAVTAYQNE 186
S+ N N MLN Y P++ + + + R I F E+ VT Y+N
Sbjct: 533 SYLTKPFLNILQSNFNYMLNGNWFY-PKLTRIDIDIEPREITIRCFQESHSFYVTFYENS 591
Query: 187 EVTSLKIKYNPFAKAFLDAK 206
+K+ PF A + A+
Sbjct: 592 SGCIIKVPEPPFNSALVPAE 611
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.314 0.132 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,383,564
Number of Sequences: 27539
Number of extensions: 354572
Number of successful extensions: 773
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 699
Number of HSP's gapped (non-prelim): 35
length of query: 469
length of database: 12,573,161
effective HSP length: 84
effective length of query: 385
effective length of database: 10,259,885
effective search space: 3950055725
effective search space used: 3950055725
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 61 (28.7 bits)
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