GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000321-TA|BGIBMGA000321-PA|IPR009053|Prefoldin
         (356 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   1.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   5.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   5.9  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 89  KIQALKKEKETLAHHYEREEE 109
           KI AL++E+ETL    +RE +
Sbjct: 345 KIVALRQEQETLKSQVQRESD 365


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/22 (36%), Positives = 16/22 (72%)

Query: 250  NENKEKMHRFALEEKHIREENM 271
            +ENKE+  R A + K +R++++
Sbjct: 1248 DENKEEKARIAADLKELRDQSV 1269


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/22 (36%), Positives = 16/22 (72%)

Query: 250  NENKEKMHRFALEEKHIREENM 271
            +ENKE+  R A + K +R++++
Sbjct: 1248 DENKEEKARIAADLKELRDQSV 1269


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.311    0.126    0.336 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,601
Number of Sequences: 317
Number of extensions: 1850
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 356
length of database: 114,650
effective HSP length: 58
effective length of query: 298
effective length of database: 96,264
effective search space: 28686672
effective search space used: 28686672
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 44 (21.8 bits)