Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000320-TA|BGIBMGA000320-PA|IPR002893|Zinc finger,
MYND-type, IPR009009|Barwin-related endoglucanase,
IPR007320|Programmed cell death protein 2, C-terminal
(353 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M... 72 1e-13
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 60 6e-10
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo... 36 0.011
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 30 0.57
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha... 28 2.3
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|... 28 2.3
SPBC1703.03c |||armadillo repeat protein, unknown biological rol... 26 7.0
>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 274
Score = 72.1 bits (169), Expect = 1e-13
Identities = 45/134 (33%), Positives = 69/134 (51%), Gaps = 10/134 (7%)
Query: 217 EKLNKMMQEKKVGXXXXXXXXXXXXYTRTVPNDKVFNKFSKRVARHPEQVLRY---DRGG 273
E+ K + EK YT+ D F KF KR++R P+Q++RY
Sbjct: 128 EENKKEIPEKLKNVKVDTENPSAEPYTKA-KGDVSFLKFQKRLSRAPDQIMRYYHATSNE 186
Query: 274 VP-LWITSNNDSLVHR-PKCEYCNGERQFEFQIMPQLLNFLDVGVEL-NSIDWGVLAIYT 330
P LW NN+ + P C C +RQ EFQI+P L++ +++ N++DWG+L+IY
Sbjct: 187 FPGLWC--NNECIPSSIPNCA-CGAKRQLEFQILPTLISSMNIDHSAKNALDWGILSIYV 243
Query: 331 CKASCNKGSAYMLE 344
C ASC+ + + E
Sbjct: 244 CSASCDLANCGLAE 257
Score = 39.1 bits (87), Expect = 0.001
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 6 VDIGVL-EEKPSWLLHPRFFPSKIGGKPSWLNLQDLPKSSELLCKKCQDPTVFLCQVYAP 64
VD+G L +EK + S++GG P ++ D +E L ++ FL Q+YAP
Sbjct: 4 VDLGFLSQEKLDEKDYLDIECSRVGGAPLFIRKNDAAFLNESL----ENSFEFLMQLYAP 59
Query: 65 FEDVEDCFHRTIFIFICKNGNCCSKNHTDNFIVLRCQLPRTND 107
++ E +HR ++IFI ++G+ + T V R Q T++
Sbjct: 60 -KNSEISYHRILYIFINRDGDSQTAGWTRGVKVFREQARETDE 101
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 59.7 bits (138), Expect = 6e-10
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 17/100 (17%)
Query: 249 DKVFNKFSKRVARHPEQVLRYDRGGVPLWITSNNDSLVHR------------PKCEYCNG 296
+K F FS++++ +P Q LRY+RGG PL + S D L + P C C
Sbjct: 282 EKTFRLFSEKISHNPTQCLRYERGGTPL-LASGRDKLGQQLKSVTNFGKSPVPLCPLCKS 340
Query: 297 ERQFEFQIMPQLLNFLDVGVELNSIDWGVLAIYTCKASCN 336
R FE Q+MP ++ L+ + +W + + TC CN
Sbjct: 341 PRLFEMQLMPHAISILNDEI----AEWSTILVATCSMDCN 376
Score = 29.5 bits (63), Expect = 0.75
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 21 PRFFPSKIGGKPSWLNLQDLPKSSELLCKKCQDPTVFLCQVYAPFEDVEDCFHRTIFIFI 80
P + + +GG P + + L + + C C++ L Q YAP E ++ R ++++
Sbjct: 25 PDEYSTFLGGFPVFFDGCSL-NPNIIKCGNCKNLCRLLLQCYAPLEG-DNLKERALYVWG 82
Query: 81 CKNGNC 86
C N +C
Sbjct: 83 CHNPSC 88
>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 35.5 bits (78), Expect = 0.011
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 127 TKLCDVCGARG--PAHCSRCKKVYYCSRKHQIIDWQKGHKEQCPQLQS 172
T+ C C C+ CK ++YCS+ Q DW HK +C LQ+
Sbjct: 46 TRTCSTCTEEKVKTQRCAACKIIHYCSKGCQKADW-PFHKLECKALQA 92
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 29.9 bits (64), Expect = 0.57
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 139 AHCSRCKKVYYCSRKHQIIDWQKGHKEQC 167
A C RC++ YCS++ Q W GH C
Sbjct: 496 AKCRRCRRTKYCSKECQHQAW-PGHSRWC 523
>SPBC29A3.05 |||chromatin remodeling complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 27.9 bits (59), Expect = 2.3
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 128 KLCDVCGARGPAHCSRCKKVYYCSRKHQII 157
K C+VCG G C C YCS+ ++I
Sbjct: 100 KFCNVCGYWGKYACQNC-GTSYCSKGCEVI 128
>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1369
Score = 27.9 bits (59), Expect = 2.3
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 249 DKV-FNKFSKRVARHPEQVLRYDRGGVPLWITSNNDSLVHRPKCEYCNGERQ 299
DKV F K ++ + P+ + GG+PL + + DSL K C GE Q
Sbjct: 1108 DKVEFEKNYEKSKKGPDVIANALVGGIPLSLKTKEDSLYELSKFSQC-GEDQ 1158
>SPBC1703.03c |||armadillo repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 664
Score = 26.2 bits (55), Expect = 7.0
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 308 LLNFLDVGVELNSIDWGVLAIYTCKASCNKGSAYMLEYMIKQDLSD 353
LL+ LD E+ W AI ASC +G Y+L+ + L D
Sbjct: 40 LLSRLD-NPEIKERSWACSAISNIIASCTEGRLYLLKNGLVSKLID 84
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.322 0.138 0.450
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,768,895
Number of Sequences: 5004
Number of extensions: 77393
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 129
Number of HSP's gapped (non-prelim): 9
length of query: 353
length of database: 2,362,478
effective HSP length: 73
effective length of query: 280
effective length of database: 1,997,186
effective search space: 559212080
effective search space used: 559212080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)
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