Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000320-TA|BGIBMGA000320-PA|IPR002893|Zinc finger,
MYND-type, IPR009009|Barwin-related endoglucanase,
IPR007320|Programmed cell death protein 2, C-terminal
(353 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0701 - 10523053-10523220,10523802-10523916,10524102-105241... 225 4e-59
01_05_0451 - 22361617-22361811,22362728-22362842,22363443-223635... 118 9e-27
02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931,813... 54 2e-07
06_03_0968 - 26402154-26403834,26404322-26404383,26404473-264046... 47 2e-05
08_02_1014 - 23586552-23587224,23587402-23587463,23587735-235879... 46 5e-05
07_03_0378 + 17446311-17446514,17446814-17446927,17447124-174472... 40 0.004
04_04_1321 + 32634471-32634566,32635102-32635193,32635290-326355... 40 0.004
01_06_1840 - 40250285-40251022,40251121-40251283,40251523-40251731 39 0.005
04_03_0710 - 18916593-18917372,18917467-18917629,18917715-18917959 35 0.086
02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942 35 0.11
11_03_0135 - 10547460-10547558,10547926-10548086,10548183-105483... 29 4.3
03_05_0841 - 28104977-28105142,28105439-28105502,28105586-281056... 29 5.6
03_06_0096 - 31627332-31627570,31628467-31628743,31628963-316291... 29 7.4
>03_02_0701 -
10523053-10523220,10523802-10523916,10524102-10524172,
10524263-10524420,10524497-10524590,10524678-10524766,
10525322-10525419,10525492-10525625,10525714-10525797,
10525903-10526151
Length = 419
Score = 225 bits (550), Expect = 4e-59
Identities = 128/361 (35%), Positives = 186/361 (51%), Gaps = 23/361 (6%)
Query: 2 EPRKVDIGVLEE-KPSWLLHPRFFPSKIGGKPSWLNLQDLPKSSELLCKKCQDPTVFLCQ 60
E +V +G LE+ K LL FPSK GG P+WL+ +LP + C C +P F+ Q
Sbjct: 52 EEAEVTLGFLEKPKHPGLLLRHLFPSKAGGIPAWLDPVNLPSGNSRCCGFCGEPLQFVLQ 111
Query: 61 VYAPFEDVEDCFHRTIFIFICKNGNCCSKNHTDNF-----------IVLRCQLPRTNDFY 109
+YAP ED FHRT+F+F+C + C ++ D + V RCQLPR+N FY
Sbjct: 112 IYAPIEDNAASFHRTLFMFMCPSMACLLRDQHDQWKHRQGNPCRSVKVFRCQLPRSNAFY 171
Query: 110 SYQPYEEKDEEFPMDHWTKLCDVCGA-RGPAHCSRCKKVYYCSRKHQIIDWQKGHKEQCP 168
S +P + D + P+ +C CG +G CS CKK YCS KHQ + W+ GHK C
Sbjct: 172 SSEPPKHNDSDKPLCPGAPVCHWCGTWKGDKLCSSCKKARYCSEKHQTLHWRSGHKSDCL 231
Query: 169 QLQSGDIVSTNNF-KITKAGQSVLFKEWELIVXXXXXXXPNNTDINQEMEKLNKMMQEKK 227
QL S S++ F + K S + E+E+ + ++ D E +K + ++
Sbjct: 232 QLISSSEASSSIFPAVGKVPASKSWPEYEIAIDYEGAFNSDSCD-----ESNSKSLVMQR 286
Query: 228 VGXXXXXXXXXXXXYTRTVPNDKVFNKFSKRVARHPEQVLRY--DRGGVPLW-ITSNNDS 284
G + N K + F +RV+R P+QVLRY + PLW +++ S
Sbjct: 287 PGKPDDMMQSWMDQFEADADN-KCWASFQERVSRAPKQVLRYCREENAKPLWALSAGCPS 345
Query: 285 LVHRPKCEYCNGERQFEFQIMPQLLNFLDVGVELNSIDWGVLAIYTCKASCNKGSAYMLE 344
P C YC G +EFQIMPQLL + V E +S+DW + +YTCK SC++ +Y E
Sbjct: 346 NADIPSCSYCRGPLCYEFQIMPQLLYYFGVKNEPDSLDWATIVVYTCKGSCDQNVSYKEE 405
Query: 345 Y 345
+
Sbjct: 406 F 406
>01_05_0451 -
22361617-22361811,22362728-22362842,22363443-22363513,
22363600-22363754,22363843-22363933,22364049-22364104,
22364910-22365027,22365087-22365200,22365289-22365504
Length = 376
Score = 118 bits (283), Expect = 9e-27
Identities = 64/213 (30%), Positives = 105/213 (49%), Gaps = 10/213 (4%)
Query: 137 GPAHCSRCKKVYYCSRKHQIIDWQKGHKEQCPQLQSGDIVSTNNFKITKAGQSVLFKEWE 196
G CSRC+K YCS+KHQ + W+ HK +C Q+ S K ++ E+
Sbjct: 150 GEKVCSRCRKSSYCSKKHQELHWRAKHKNECHQISGSHNASAIMPDAGKVFAGNIWPEYM 209
Query: 197 LIVXXXXXXXPNNTDINQEMEKLNKMMQEKKVGXXXXXXXXXXXXYTRTVPNDKVFNKFS 256
++ E ++++ E+ + +++ + F
Sbjct: 210 VV------DETEKVSCFASCENRSELLMEQGQSEEDDMTASLMDQF-EVDDDNRCWASFL 262
Query: 257 KRVARHPEQVLRYDRGGV--PLWIT-SNNDSLVHRPKCEYCNGERQFEFQIMPQLLNFLD 313
+R++R +QVLRY R PLW+ S + + +P C YCNG +EFQIMPQLL++
Sbjct: 263 ERISREQDQVLRYCRESTAKPLWVVYSGSLTNAAKPSCIYCNGPLCYEFQIMPQLLHYFH 322
Query: 314 VGVELNSIDWGVLAIYTCKASCNKGSAYMLEYM 346
V E +S+DW + +YTCK SC++ +YM E++
Sbjct: 323 VENEPDSLDWATIIVYTCKGSCDQNVSYMEEFV 355
Score = 64.9 bits (151), Expect = 9e-11
Identities = 37/100 (37%), Positives = 54/100 (54%), Gaps = 15/100 (15%)
Query: 1 MEPRKVDIGVLEEKPS---W-LLHPRFFPSKIGGKPSWLNLQDLPKSSELLCKKCQDPTV 56
M+P+ V +G +EE W LL P+ FP+K GG P+WL+ +LP C C +P
Sbjct: 38 MDPQ-VTLGFIEEPEGPEDWHLLLPQHFPNKAGGVPAWLDPVNLPSGKSRCCDFCGEPLR 96
Query: 57 FL----------CQVYAPFEDVEDCFHRTIFIFICKNGNC 86
F+ QVYAP + E +HRT+F+F+C + C
Sbjct: 97 FVLQVVFHLYDKLQVYAPIQCKETAYHRTLFVFMCPSMAC 136
>02_02_0236 +
8135641-8135795,8136167-8136557,8136640-8136931,
8137117-8137271,8137363-8137451,8137623-8137967,
8139046-8139169,8139424-8139581,8139673-8139757,
8140094-8140306,8141314-8141375,8141466-8141951,
8142472-8142568
Length = 883
Score = 53.6 bits (123), Expect = 2e-07
Identities = 21/40 (52%), Positives = 24/40 (60%)
Query: 130 CDVCGARGPAHCSRCKKVYYCSRKHQIIDWQKGHKEQCPQ 169
C C CSRCK V YCS K QII W++GHK+ C Q
Sbjct: 32 CATCHGPAKTRCSRCKSVRYCSGKCQIIHWRQGHKQTCQQ 71
>06_03_0968 -
26402154-26403834,26404322-26404383,26404473-26404682,
26404776-26404860,26405461-26405618,26405745-26405868,
26405955-26406123,26406202-26406287,26406379-26406467,
26406564-26406735,26407820-26408193
Length = 1069
Score = 47.2 bits (107), Expect = 2e-05
Identities = 19/42 (45%), Positives = 24/42 (57%)
Query: 130 CDVCGARGPAHCSRCKKVYYCSRKHQIIDWQKGHKEQCPQLQ 171
C CG CS CK+V YCS+ Q WQ GHK +C Q++
Sbjct: 105 CAACGYIATKKCSGCKRVRYCSQGCQSKHWQSGHKFKCKQMK 146
>08_02_1014 -
23586552-23587224,23587402-23587463,23587735-23587950,
23588125-23588209,23589232-23589389,23589505-23589625,
23590081-23590243,23590330-23590415,23590660-23590742,
23590816-23591677,23593266-23593693
Length = 978
Score = 46.0 bits (104), Expect = 5e-05
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 129 LCDVCGARGPAHCSRCKKVYYCSRKHQIIDWQKGHKEQC 167
+C VC C +CK V YCS K QI W++GHK +C
Sbjct: 122 VCAVCFRPTTFRCKQCKAVKYCSFKCQIAHWRQGHKNEC 160
>07_03_0378 +
17446311-17446514,17446814-17446927,17447124-17447242,
17447595-17447641,17447720-17447820,17450769-17450840,
17451290-17451403,17451495-17451500,17451501-17451611
Length = 295
Score = 39.5 bits (88), Expect = 0.004
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 129 LCDVCGARGPAHCSRCKKVYYCSRKHQIIDWQKGHKEQCPQL 170
+ + C C C V YCSR HQ + W HKE+C +L
Sbjct: 42 VAEPCAGEARRRCGGCGAVAYCSRAHQTVHW-GFHKEECARL 82
>04_04_1321 +
32634471-32634566,32635102-32635193,32635290-32635585,
32635665-32635863,32636019-32636223,32637001-32637093
Length = 326
Score = 39.5 bits (88), Expect = 0.004
Identities = 32/96 (33%), Positives = 40/96 (41%), Gaps = 19/96 (19%)
Query: 242 YTRTVPNDKVFNKFSKRVARHPEQVLRYDRGGVPLWITSNNDSLVHRPKCEYCNGERQFE 301
Y R + D+ F KF KR Y GG PL +N L C+ C RQ+E
Sbjct: 212 YDRAIGADRTFLKFKKR----------YSYGGKPLLAATN---LQDSGTCQLCGSPRQYE 258
Query: 302 FQIMPQLLNFLDVGVELNS------IDWGVLAIYTC 331
Q+M L FL + +S W L IYTC
Sbjct: 259 LQLMSPLSYFLHEAGDGSSDYAPDGWTWLTLIIYTC 294
>01_06_1840 - 40250285-40251022,40251121-40251283,40251523-40251731
Length = 369
Score = 39.1 bits (87), Expect = 0.005
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 141 CSRCKKVYYCSRKHQIIDWQKGHKEQC 167
CS C YCSR Q +DW++ HK QC
Sbjct: 329 CSVCGAANYCSRACQALDWKRAHKAQC 355
>04_03_0710 - 18916593-18917372,18917467-18917629,18917715-18917959
Length = 395
Score = 35.1 bits (77), Expect = 0.086
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 141 CSRCKKVYYCSRKHQIIDWQKGHKEQC 167
CS C V YCSR Q + W+ HK +C
Sbjct: 342 CSVCGVVNYCSRACQALHWKTAHKAEC 368
>02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942
Length = 379
Score = 34.7 bits (76), Expect = 0.11
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 141 CSRCKKVYYCSRKHQIIDWQKGHKEQC 167
CS C V YCSR Q + W+ HK C
Sbjct: 322 CSVCSGVIYCSRACQAMHWKVAHKSAC 348
>11_03_0135 -
10547460-10547558,10547926-10548086,10548183-10548306,
10548566-10548729,10549803-10549883,10549973-10550097,
10550200-10550430,10550566-10550588,10551055-10551539,
10551678-10552075,10552903-10552988,10553120-10553397,
10553494-10553714,10553927-10554018,10554148-10554213,
10555855-10556022
Length = 933
Score = 29.5 bits (63), Expect = 4.3
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Query: 114 YEEKDEEFPMDHWTKLCDVCGARGP----AHCSRCK---KVYYCSR 152
Y + E D K+CD+CG G A CSRC + YC R
Sbjct: 68 YVDSSSEESEDQQVKICDICGDVGEEKKLAICSRCNDGAEHIYCMR 113
>03_05_0841 -
28104977-28105142,28105439-28105502,28105586-28105655,
28105743-28105852,28106217-28106295,28106610-28106691,
28106791-28106879,28107351-28107425,28107728-28107862,
28108018-28108163,28108380-28108491
Length = 375
Score = 29.1 bits (62), Expect = 5.6
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 130 CDVCGA-RGPAHCSRCKKVYYCSRKHQIIDWQKGHKEQC 167
CD C A R CS C+ +YC Q +W K H+ +C
Sbjct: 60 CDNCFASRNLRKCSVCRVAWYCGSACQREEW-KLHQLEC 97
>03_06_0096 -
31627332-31627570,31628467-31628743,31628963-31629118,
31629205-31629381,31629543-31629745,31630680-31630995
Length = 455
Score = 28.7 bits (61), Expect = 7.4
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 99 RCQLPRTNDFYSYQPYEEKDEEFPMDHWTKL-CDVCGARGPAHCSRCKKVY 148
R ++ R N F YQ E++E F M T L C G S K Y
Sbjct: 150 RTEISRFNSFTGYQTLNEREESFKMKELTTLHCGFYNENGGFKVSDVDKDY 200
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.138 0.450
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,924,057
Number of Sequences: 37544
Number of extensions: 467466
Number of successful extensions: 761
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 742
Number of HSP's gapped (non-prelim): 15
length of query: 353
length of database: 14,793,348
effective HSP length: 83
effective length of query: 270
effective length of database: 11,677,196
effective search space: 3152842920
effective search space used: 3152842920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)
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