Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000320-TA|BGIBMGA000320-PA|IPR002893|Zinc finger,
MYND-type, IPR009009|Barwin-related endoglucanase,
IPR007320|Programmed cell death protein 2, C-terminal
(353 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17099| Best HMM Match : zf-MYND (HMM E-Value=2.4e-11) 194 7e-50
SB_31958| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 6e-09
SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18) 42 8e-04
SB_27679| Best HMM Match : zf-MYND (HMM E-Value=0.00039) 41 0.001
SB_24756| Best HMM Match : 7tm_1 (HMM E-Value=2e-08) 40 0.004
SB_56686| Best HMM Match : Cadherin (HMM E-Value=0) 38 0.012
SB_10657| Best HMM Match : zf-MYND (HMM E-Value=2.6e-06) 37 0.028
SB_8926| Best HMM Match : adh_short (HMM E-Value=1.5e-15) 36 0.066
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.11
SB_31125| Best HMM Match : zf-MYND (HMM E-Value=0.0003) 33 0.46
SB_7007| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_11364| Best HMM Match : TPR_2 (HMM E-Value=3e-06) 31 1.4
SB_3815| Best HMM Match : zf-MYND (HMM E-Value=1.3e-11) 31 1.4
SB_19193| Best HMM Match : zf-MYND (HMM E-Value=0.00017) 31 1.9
SB_55606| Best HMM Match : TPR_2 (HMM E-Value=8.3e-08) 31 1.9
SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32) 30 2.5
SB_50662| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_18286| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_50573| Best HMM Match : WH1 (HMM E-Value=0.0015) 28 10.0
>SB_17099| Best HMM Match : zf-MYND (HMM E-Value=2.4e-11)
Length = 200
Score = 194 bits (474), Expect = 7e-50
Identities = 93/192 (48%), Positives = 118/192 (61%), Gaps = 18/192 (9%)
Query: 2 EPRKVDIGVLEE--KPSWLLHPRFFPSKIGGKPSWLNLQDLPKSSELLCKKCQDPTVFLC 59
E V++G +E+ P L P FFPSK+GG P+WL+L++LP S+ LLCK CQ P FL
Sbjct: 6 EEDDVELGFVEKVANPLRLASP-FFPSKVGGVPAWLDLENLPSSNGLLCKSCQKPLAFLM 64
Query: 60 QVYAPFED----VEDCFHRTIFIFICKNGNCCSKNHTDNFIVLRCQLPRTNDFYSYQPYE 115
QVY+PF + E CFHRT+F+F C+NG C +N D F+VLRCQLPR N FYS+ P
Sbjct: 65 QVYSPFSEGVASEERCFHRTVFVFCCRNGKCYKRNSNDCFLVLRCQLPRKNKFYSFNPPP 124
Query: 116 EKDE-----------EFPMDHWTKLCDVCGARGPAHCSRCKKVYYCSRKHQIIDWQKGHK 164
E D+ EF + LCDVCG G CS+CK V+YCSR HQ+ W+ GHK
Sbjct: 125 EIDDNENVTLESVSSEFRPRKFACLCDVCGCSGTKKCSKCKSVFYCSRDHQVFGWKTGHK 184
Query: 165 EQCPQLQSGDIV 176
C QL G +
Sbjct: 185 TACNQLAEGKTI 196
>SB_31958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 425
Score = 58.8 bits (136), Expect = 6e-09
Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 249 DKVFNKFSKRVARHPEQVLRYDRGGVPLWITSNNDSLVHR---PKCEYCNGERQFEFQIM 305
DK F+KF K++ P+Q LRY G PL+I +++LV P C YCN + FE Q+M
Sbjct: 183 DKGFHKFHKQLLSCPQQCLRYQWDGTPLFINPESEALVGATGIPICSYCNAPKIFEMQLM 242
Query: 306 PQLLNFL 312
P L++ L
Sbjct: 243 PALVSKL 249
>SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18)
Length = 516
Score = 41.9 bits (94), Expect = 8e-04
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 141 CSRCKKVYYCSRKHQIIDWQKGHKEQCPQLQSG 173
C+RCK+V+YCS+ ++ W H+E+C ++ G
Sbjct: 406 CTRCKEVFYCSKSCKLKAWNSRHREECVRVTGG 438
>SB_27679| Best HMM Match : zf-MYND (HMM E-Value=0.00039)
Length = 167
Score = 41.1 bits (92), Expect = 0.001
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 141 CSRCKKVYYCSRKHQIIDWQKGHKEQCPQLQSG 173
C+RCK+V+YCS+ ++ W H+E+C ++ G
Sbjct: 32 CTRCKEVFYCSKSCKLKAWNSRHREECVRVTVG 64
>SB_24756| Best HMM Match : 7tm_1 (HMM E-Value=2e-08)
Length = 690
Score = 39.5 bits (88), Expect = 0.004
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 129 LCDVCGARGPAHCSRCKKVYYCSRKHQIIDWQKGHKEQCPQLQS 172
+C++C C+ C+ YYC +HQ DW H++ C L +
Sbjct: 16 VCELCQKPAFVQCTDCRVTYYCGPEHQRADWLGIHEKICQLLMA 59
>SB_56686| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1888
Score = 37.9 bits (84), Expect = 0.012
Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 127 TKLCDVCGARGPAHCSRCKKVYYCSRKHQIIDWQKGHKEQCPQLQSGDI 175
T+L CG CS C YC +K Q+ DW K HK C QS DI
Sbjct: 1840 TRLFCPCGQTAQFTCSACNSRGYCGQKCQLKDWGK-HKTDCHN-QSRDI 1886
>SB_10657| Best HMM Match : zf-MYND (HMM E-Value=2.6e-06)
Length = 167
Score = 36.7 bits (81), Expect = 0.028
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 118 DEEFPMDHWTKLCDVCGARGP--AHCSRCKKVYYCSRKHQIIDWQKGHKEQC 167
D+ ++C CG + C +C KVYYCSR Q D +K H+++C
Sbjct: 116 DQVVEQQQQQRMCANCGLAKIRLSKCGKCLKVYYCSRNCQKED-RKWHRQEC 166
>SB_8926| Best HMM Match : adh_short (HMM E-Value=1.5e-15)
Length = 537
Score = 35.5 bits (78), Expect = 0.066
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 141 CSRCKKVYYCSRKHQIIDWQKGHKEQC 167
C+RC+ V YCSR Q I W K HK C
Sbjct: 27 CTRCRGVLYCSRSCQSIHWPK-HKVTC 52
>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 34.7 bits (76), Expect = 0.11
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 130 CDVCGARGPAHCSRCKKVYYCSRKHQIIDWQKGHKEQC 167
C CG G C+ C K+ YCSRK Q W + HK C
Sbjct: 141 CTNCGKLGGKKCTAC-KIPYCSRKCQQQHWPQ-HKTTC 176
>SB_31125| Best HMM Match : zf-MYND (HMM E-Value=0.0003)
Length = 109
Score = 32.7 bits (71), Expect = 0.46
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 130 CDVCGARG--PAHCSRCKKVYYCSRKHQIIDWQKGHKEQC 167
C C A G CS C +YC+ Q DW GH+ C
Sbjct: 64 CSWCKAHGFGMMACSGCMSKFYCNEICQERDWSLGHQFDC 103
>SB_7007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 608
Score = 31.5 bits (68), Expect = 1.1
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 130 CDVCGARGP--AHCSRCKKVYYCSRKHQIIDWQKGHKEQCPQL 170
C C +G CS C +YCS++ Q W HK++C ++
Sbjct: 55 CHKCSQKGGNMKQCSNCLSAWYCSKECQGEAW-GSHKKRCTKM 96
>SB_11364| Best HMM Match : TPR_2 (HMM E-Value=3e-06)
Length = 357
Score = 31.1 bits (67), Expect = 1.4
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 138 PAHCSRCKKVYYCSRKHQIIDWQKGHKEQCPQLQ 171
P CS C V YCS K W H +C L+
Sbjct: 291 PLPCSYCTTVRYCSEKCAKESWDAYHYAECTNLE 324
>SB_3815| Best HMM Match : zf-MYND (HMM E-Value=1.3e-11)
Length = 281
Score = 31.1 bits (67), Expect = 1.4
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 130 CDVCGAR--GPAHCSRCKKVYYCSRKHQIIDWQKGHKEQCPQLQ 171
CD C + CSRCK YC Q W + HK +C +L+
Sbjct: 51 CDFCLEKLSDLQRCSRCKFARYCGASCQRAAW-RIHKSECERLK 93
>SB_19193| Best HMM Match : zf-MYND (HMM E-Value=0.00017)
Length = 294
Score = 30.7 bits (66), Expect = 1.9
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 138 PAHCSRCKKVYYCSRKHQIIDWQKGHKEQCPQLQ 171
P CS C V YCS K W H +C L+
Sbjct: 87 PLPCSYCTTVRYCSEKCAKESWDAYHYAECMNLE 120
>SB_55606| Best HMM Match : TPR_2 (HMM E-Value=8.3e-08)
Length = 771
Score = 30.7 bits (66), Expect = 1.9
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 130 CDVC--GARGPAHCSRCKKVYYCSRKHQIIDWQKGHKEQCPQLQSGDIVST 178
C+ C P C+ C V YCS + W + H +C +IV T
Sbjct: 331 CECCYKSLVAPVPCNHCSSVLYCSAACRNKAWSQYHHVECEIFPVLEIVDT 381
>SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)
Length = 905
Score = 30.3 bits (65), Expect = 2.5
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 130 CDVCGARGPA--HCSRCKKVYYCSRKHQIIDWQKGHKEQC 167
C+ C A CSRCK YCS+ W K HK C
Sbjct: 8 CEFCYATNVQLQKCSRCKSTMYCSKDCPRSHW-KHHKAIC 46
>SB_50662| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 161
Score = 30.3 bits (65), Expect = 2.5
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 125 HWTKLCDVCG--ARGPAH---CSRCKKVYYCSRKHQIIDWQKGHKEQC 167
H+ + C CG GP C C V YCS Q W++ H+ C
Sbjct: 99 HFRESCGGCGWEENGPERLYLCGGCLGVRYCSSLCQRRHWEEEHRRVC 146
>SB_18286| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1339
Score = 29.1 bits (62), Expect = 5.7
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 141 CSRCKKVYYCSRKHQIIDWQKGHKEQCPQLQSG 173
C C Y + +W KGHKE C + G
Sbjct: 355 CWECNNQAYDRASEEYHNWYKGHKETCSETFEG 387
>SB_50573| Best HMM Match : WH1 (HMM E-Value=0.0015)
Length = 554
Score = 28.3 bits (60), Expect = 10.0
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 260 ARHPEQVLRYDRGGVPLWITSNNDSLVHRPKCEY-CNGERQFEF 302
A +P V +Y R G+P + S+ S PK Y C ERQ F
Sbjct: 50 ATNPSNVWQYVRTGIPAIVVSSGHSGDRNPKGMYVCLVERQSGF 93
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.322 0.138 0.450
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,162,861
Number of Sequences: 59808
Number of extensions: 570287
Number of successful extensions: 1223
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1201
Number of HSP's gapped (non-prelim): 24
length of query: 353
length of database: 16,821,457
effective HSP length: 83
effective length of query: 270
effective length of database: 11,857,393
effective search space: 3201496110
effective search space used: 3201496110
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)
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