GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000320-TA|BGIBMGA000320-PA|IPR002893|Zinc finger,
MYND-type, IPR009009|Barwin-related endoglucanase,
IPR007320|Programmed cell death protein 2, C-terminal
         (353 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   7.0  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   9.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   9.2  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 137 GPAHCSRCKKVYY 149
           GP+HC  C+  +Y
Sbjct: 190 GPSHCVVCQNFFY 202



 Score = 22.2 bits (45), Expect = 7.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)

Query: 160 QKGHKEQCPQLQ 171
           +K H+ QCP LQ
Sbjct: 305 RKSHESQCPMLQ 316


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 6/48 (12%)

Query: 295 NGERQFEFQIMPQLLNFLDVGVELNSIDWG----VLAIYTCKASCNKG 338
           NG   +++Q++ +  N LD+  E   + W      + I  C   C  G
Sbjct: 411 NGTNGYQYQVVGKWFNSLDIRTE--ELIWARGTKDIPISACSLPCEPG 456


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 6/48 (12%)

Query: 295 NGERQFEFQIMPQLLNFLDVGVELNSIDWG----VLAIYTCKASCNKG 338
           NG   +++Q++ +  N LD+  E   + W      + I  C   C  G
Sbjct: 501 NGTNGYQYQVVGKWFNSLDIRTE--ELIWARGTKDIPISACSLPCEPG 546


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.138    0.450 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,934
Number of Sequences: 429
Number of extensions: 5013
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 4
length of query: 353
length of database: 140,377
effective HSP length: 58
effective length of query: 295
effective length of database: 115,495
effective search space: 34071025
effective search space used: 34071025
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)