Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000320-TA|BGIBMGA000320-PA|IPR002893|Zinc finger,
MYND-type, IPR009009|Barwin-related endoglucanase,
IPR007320|Programmed cell death protein 2, C-terminal
(353 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g02220.1 68417.m00300 zinc finger (MYND type) family protein ... 217 1e-56
At5g64830.1 68418.m08156 programmed cell death 2 C-terminal doma... 73 2e-13
At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ... 54 1e-07
At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase f... 54 2e-07
At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase f... 52 6e-07
At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15) ... 51 1e-06
At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f... 49 4e-06
At5g50450.1 68418.m06247 zinc finger (MYND type) family protein ... 40 0.003
At1g70150.1 68414.m08072 zinc finger (MYND type) family protein ... 37 0.018
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ... 37 0.018
At3g10200.1 68416.m01221 dehydration-responsive protein-related ... 35 0.094
At3g17670.1 68416.m02256 ferredoxin-related contains Pfam PF0051... 33 0.38
At2g17900.1 68415.m02073 zinc finger (MYND type) family protein ... 32 0.66
At3g04720.1 68416.m00508 hevein-like protein (HEL) identical to ... 29 3.5
At5g06230.2 68418.m00695 expressed protein contains Pfam profile... 29 4.7
At5g06230.1 68418.m00696 expressed protein contains Pfam profile... 29 4.7
At5g16680.1 68418.m01951 PHD finger family protein contains Pfam... 29 6.2
At3g21820.1 68416.m02751 SET domain-containing protein contains ... 29 6.2
At5g55840.1 68418.m06958 pentatricopeptide (PPR) repeat-containi... 28 8.2
At2g44380.1 68415.m05520 DC1 domain-containing protein highly si... 28 8.2
At2g28270.1 68415.m03431 DC1 domain-containing protein contains ... 28 8.2
>At4g02220.1 68417.m00300 zinc finger (MYND type) family protein /
programmed cell death 2 C-terminal domain-containing
protein similar to SP|Q16342 Programmed cell death
protein 2 (Zinc finger protein Rp-8) {Homo sapiens};
contains Pfam profiles PF01753: MYND finger, PF04194:
Programmed cell death protein 2, C-terminal putative
domain
Length = 418
Score = 217 bits (529), Expect = 1e-56
Identities = 124/362 (34%), Positives = 181/362 (50%), Gaps = 25/362 (6%)
Query: 6 VDIGVLEE-KPSWLLHPRFFPSKIGGKPSWLNLQDLPKSSELLCKKCQDPTVFLCQVYAP 64
V +G +E K +W + FP+ GG P+WL+ +LP +LC C++P F+ Q+YAP
Sbjct: 52 VMLGFVESPKFAWSNLRQLFPNLAGGVPAWLDPVNLPSGKSILCDLCEEPMQFVLQLYAP 111
Query: 65 FEDVEDCFHRTIFIFICKNGNCCSKNHTDNF-----------IVLRCQLPRTNDFYSYQP 113
D E FHRT+F+F+C + +C ++ + + V RCQLPR N FYS +
Sbjct: 112 LTDKESAFHRTLFLFMCPSMSCLLRDQHEQWKRAPEKAMRSTKVFRCQLPRANPFYSSEA 171
Query: 114 YEEKDEEFPMDHWTKLCDVCGA-RGPAHCSRCKKVYYCSRKHQIIDWQKGHKEQCPQL-- 170
+ + P+ H LC CG +G CS CK YCS KHQ + W+ GHK +C QL
Sbjct: 172 PKHDGTDKPLGHGAPLCTWCGTWKGDKLCSGCKNARYCSPKHQALHWRLGHKTECQQLRT 231
Query: 171 --QSGDIVSTNNFKITKAGQSVLFKE-WELIVXXXXXXXPNNTDINQEMEKLNKMMQEKK 227
++ D NN Q V K W+ V +T+++ + E ++ +++
Sbjct: 232 VSETSDSGPVNNGVAPTEKQKVASKSLWKEFVLINEDESEYDTEMSGDDEVAKPLVSKRE 291
Query: 228 VGXXXXXXXXXXXXYTRTVPNDKVFNKFSKRVARHPEQVLRYDR--GGVPLW-ITSNNDS 284
V + K + F +RV + PEQVLRY R G PLW I S S
Sbjct: 292 VDDQMKSLMNDFEGDA----DKKNWVNFQQRVDKAPEQVLRYSRSSGAKPLWPIASGRVS 347
Query: 285 LVHRPKCEYCNGERQFEFQIMPQLLNFLDVGVELNSIDWGVLAIYTCKASCNKGSAYMLE 344
P C+ C G R FEFQ+MPQLL F E S+DW + +YTC+ SC+ +Y E
Sbjct: 348 KSELPSCKSCGGPRCFEFQVMPQLLFFFGGKNERESLDWATIVVYTCENSCDSSLSYKEE 407
Query: 345 YM 346
++
Sbjct: 408 FV 409
>At5g64830.1 68418.m08156 programmed cell death 2 C-terminal
domain-containing protein low similarity to SP|P46718
Programmed cell death protein 2 (Zinc finger protein
Rp-8) {Mus musculus}; contains Pfam profile PF04194:
Programmed cell death protein 2, C-terminal domain
Length = 380
Score = 73.3 bits (172), Expect = 2e-13
Identities = 39/101 (38%), Positives = 54/101 (53%), Gaps = 10/101 (9%)
Query: 242 YTRTVPNDKVFNKFSKRVARHPEQVLRYDRGGVPLWITSNNDSLVHRPKCEYCNGERQFE 301
Y + + D+ + KF KR+ +PEQ RY GG P+ T + S KC C+ +R FE
Sbjct: 251 YDKALNADRTYLKFKKRLDANPEQCFRYWYGGKPILATEDMKS---PDKCRNCDSQRHFE 307
Query: 302 FQIMPQLLNFLDVGV-------ELNSIDWGVLAIYTCKASC 335
Q+MP L+ FL GV L++ DW L +YTC SC
Sbjct: 308 IQLMPPLIYFLHEGVVDKGIKQSLDNWDWMTLIVYTCSKSC 348
Score = 44.0 bits (99), Expect = 2e-04
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 24 FPSKIGGKPSWLNLQDLPKSSELL-CKKCQDPTVFLCQVYAPFE-DVEDCFHRTIFIFIC 81
+ +KIGG P W + D ELL C C + QVYAP ++ D RT++IF C
Sbjct: 23 YTTKIGGLPDWPPIPDDALKPELLNCCSCGSKLSLVAQVYAPISTEILDIQERTLYIFGC 82
Query: 82 KNGNC 86
C
Sbjct: 83 LMPKC 87
>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
(UBP16) similar to ubiquitin-specific protease 16
GI:11993477 [Arabidopsis thaliana]
Length = 1008
Score = 54.4 bits (125), Expect = 1e-07
Identities = 21/38 (55%), Positives = 25/38 (65%)
Query: 130 CDVCGARGPAHCSRCKKVYYCSRKHQIIDWQKGHKEQC 167
C VC CSRCK V YCS K QII W++GHK++C
Sbjct: 74 CPVCYCLATTRCSRCKAVRYCSGKCQIIHWRQGHKDEC 111
>At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 672
Score = 53.6 bits (123), Expect = 2e-07
Identities = 23/48 (47%), Positives = 26/48 (54%)
Query: 127 TKLCDVCGARGPAHCSRCKKVYYCSRKHQIIDWQKGHKEQCPQLQSGD 174
T C VCG CSRCK V YCS Q DW+ GHK +C +S D
Sbjct: 61 TAECSVCGKATTKKCSRCKSVRYCSAACQTSDWKSGHKLKCKGFRSTD 108
>At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 16 (UBP16)
[Arabidopsis thaliana] GI:11993477; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 731
Score = 52.0 bits (119), Expect = 6e-07
Identities = 20/38 (52%), Positives = 25/38 (65%)
Query: 130 CDVCGARGPAHCSRCKKVYYCSRKHQIIDWQKGHKEQC 167
C VC CS+CK V YCS K QI+ W++GHKE+C
Sbjct: 57 CAVCLYPTTTRCSQCKSVRYCSSKCQILHWRRGHKEEC 94
>At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15)
almost identical to ubiquitin-specific protease 15
GI:11993475 [Arabidopsis thaliana], 7 amino acid
difference
Length = 924
Score = 51.2 bits (117), Expect = 1e-06
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 129 LCDVCGARGPAHCSRCKKVYYCSRKHQIIDWQKGHKEQCPQLQSGDIVSTNNFKITKAGQ 188
+C C CSRCK V YCS K QII W+ HK++C ++S S+++ +++
Sbjct: 129 VCARCFGPAKTRCSRCKSVRYCSGKCQIIHWRVAHKDECVPVES---CSSSSERVSFEKD 185
Query: 189 SVLF 192
SVL+
Sbjct: 186 SVLY 189
>At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 631
Score = 49.2 bits (112), Expect = 4e-06
Identities = 19/38 (50%), Positives = 21/38 (55%)
Query: 130 CDVCGARGPAHCSRCKKVYYCSRKHQIIDWQKGHKEQC 167
C VCG CSRCK V YCS + Q DW GH+ C
Sbjct: 61 CSVCGNFSTKKCSRCKSVRYCSAECQRSDWSSGHQRNC 98
>At5g50450.1 68418.m06247 zinc finger (MYND type) family protein
contains Pfam profile PF01753: MYND finger
Length = 336
Score = 39.9 bits (89), Expect = 0.003
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 141 CSRCKKVYYCSRKHQIIDWQKGHKEQCPQL 170
CS C KV YCSR Q +DW+ HK +C L
Sbjct: 279 CSVCGKVNYCSRGCQALDWRAKHKVECTPL 308
>At1g70150.1 68414.m08072 zinc finger (MYND type) family protein
contains Pfam profile PF01753: MYND finger
Length = 387
Score = 37.1 bits (82), Expect = 0.018
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 141 CSRCKKVYYCSRKHQIIDWQKGHKEQCPQLQ 171
C +C V YCS HQI W HKE+C +L+
Sbjct: 20 CGQCGAVAYCSVSHQISHWSY-HKEECERLE 49
>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
F-box family protein
Length = 379
Score = 37.1 bits (82), Expect = 0.018
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 141 CSRCKKVYYCSRKHQIIDWQKGHKEQCPQLQ 171
CS C V YCSR Q +DW+ HK C +Q
Sbjct: 320 CSVCGVVNYCSRACQALDWKLRHKMDCAPVQ 350
>At3g10200.1 68416.m01221 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 591
Score = 34.7 bits (76), Expect = 0.094
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 14/81 (17%)
Query: 91 HTDNFIVLR--CQLPRTNDFYSYQ--PYEEKDEEFPMDHWTKLCDVCGARGPAHCSRCKK 146
HT++ I+L+ +L R N F+ Y P KD+E+PM W KL ++ A C K
Sbjct: 280 HTNDGILLKEVHRLLRPNGFFVYSSPPAYRKDKEYPM-IWDKLVNLTSA-------MCWK 331
Query: 147 VYYCSRKHQIIDWQKGHKEQC 167
+ SRK Q W K KE C
Sbjct: 332 L--ISRKVQTAIWIKEEKEVC 350
>At3g17670.1 68416.m02256 ferredoxin-related contains Pfam PF00515:
TPR Domain; similar to ferredoxin PetF2 (GI:22651984)
[Synechococcus sp. PCC 7002]
Length = 366
Score = 32.7 bits (71), Expect = 0.38
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 119 EEFPMDHWTKLCDVCGARGPAHCSRC 144
E P W K C CG G + CSRC
Sbjct: 86 EMLPRGEWPKWCKSCGGSGLSDCSRC 111
>At2g17900.1 68415.m02073 zinc finger (MYND type) family protein /
SET domain-containing protein contains Pfam profiles
PF00856: SET domain, PF01753: MYND zinc finger (ZnF)
domain; confirmed by cDNA (Paola Vittorioso--accession
not assigned yet (paola.vittorioso@uniroma1.it)
Length = 480
Score = 31.9 bits (69), Expect = 0.66
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 130 CDVC-GARGPAHCSRCKKVYYCSRKHQIIDWQKGHKEQCPQL 170
CD C CS C+ V+YC Q +W K H+++C L
Sbjct: 56 CDGCFKTNNLKKCSACQVVWYCGSSCQKSEW-KLHRDECKAL 96
>At3g04720.1 68416.m00508 hevein-like protein (HEL) identical to
SP|P43082 Hevein-like protein precursor {Arabidopsis
thaliana}; similar to SP|P09762 Wound-induced protein
WIN2 precursor {Solanum tuberosum}; contains Pfam
profile PF00187: Chitin recognition protein
Length = 212
Score = 29.5 bits (63), Expect = 3.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 126 WTKLCDVCGARGPAHCSRCKKV 147
WT C G RG A C +C +V
Sbjct: 117 WTAFCGPAGPRGQASCGKCLRV 138
>At5g06230.2 68418.m00695 expressed protein contains Pfam profile
PF03005: Arabidopsis proteins of unknown function
Length = 372
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 157 IDWQ-KGHKEQCPQLQSGDIVS-TNNFKITKAGQSVLFKEWELIVXXXXXXXPNNTDI 212
+DW+ + H P+ + D++ + N +I G S+ +WE ++ PN ++I
Sbjct: 68 LDWRWQPHGCDLPRFNASDLLERSRNGRIVFVGDSIGRNQWESLMCMLSQAIPNKSEI 125
>At5g06230.1 68418.m00696 expressed protein contains Pfam profile
PF03005: Arabidopsis proteins of unknown function
Length = 413
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 157 IDWQ-KGHKEQCPQLQSGDIVS-TNNFKITKAGQSVLFKEWELIVXXXXXXXPNNTDI 212
+DW+ + H P+ + D++ + N +I G S+ +WE ++ PN ++I
Sbjct: 109 LDWRWQPHGCDLPRFNASDLLERSRNGRIVFVGDSIGRNQWESLMCMLSQAIPNKSEI 166
>At5g16680.1 68418.m01951 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1290
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 116 EKDEEFPMDHWTKLCDVCGARGP----AHCSRCK---KVYYCSRK 153
E D+ ++H K+CD+CG G A CS C + YC R+
Sbjct: 272 ESDDSEMVEHDVKVCDICGDAGREDLLAICSGCSDGAEHTYCMRE 316
>At3g21820.1 68416.m02751 SET domain-containing protein contains
Pfam profile PF00856: SET domain
Length = 473
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 138 PAHC-SRCKKVYYCSRKHQIIDWQKGHKEQCPQLQSGDI 175
P C C++ +YCS DW+ H C +S I
Sbjct: 173 PLSCPGGCQEAFYCSESCAAADWESSHSLLCTGERSESI 211
>At5g55840.1 68418.m06958 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 1274
Score = 28.3 bits (60), Expect = 8.2
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 26 SKIGGKPSWLNLQDLPKSSELLCK--KCQDPTVFLCQVYAPFEDVEDCFHRTIFIFICKN 83
+K+G P++ L K LCK ++ FL ++A V+ + T+ +CK+
Sbjct: 570 TKVGHHPTFFTYGSLLKG---LCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKS 626
Query: 84 GNCCSKNHTDNFIVLRCQLPRTNDFYSY 111
GN +V R LP D Y+Y
Sbjct: 627 GNLAKAVSLFGEMVQRSILP---DSYTY 651
>At2g44380.1 68415.m05520 DC1 domain-containing protein highly
similar to GP|2435515|AF024504; contains Pfam profile
PF03107: DC1 domain
Length = 247
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 87 CSKNHTDNFIVLRC-QLPRTNDFYSYQPYEEKDEEFPMDHWTKLCDVCGARGPAHCSRCK 145
C K+ D F+ C LPR + S+ + P + CD CG G C
Sbjct: 48 CMKSDCDYFLHKSCFDLPRETNHKSHPNHSLTLLHSPPYGQSYTCDACGEYGSGFTYNCS 107
Query: 146 KVYY 149
+ Y
Sbjct: 108 ECQY 111
>At2g28270.1 68415.m03431 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 248
Score = 28.3 bits (60), Expect = 8.2
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 87 CSKNHTDNFIVLRC-QLPRTNDFYSYQPYEEKDEEFPMDHW-TKLCDVCGARGPA---HC 141
C+K+ D F+ C LP S+ + P + T CD CG G A HC
Sbjct: 47 CTKSECDYFLHKSCFDLPGEIHHKSHTNHPLTLLHSPPNGLSTYTCDACGEYGSAFTYHC 106
Query: 142 SRCK 145
S CK
Sbjct: 107 SECK 110
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.322 0.138 0.450
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,206,105
Number of Sequences: 28952
Number of extensions: 407540
Number of successful extensions: 723
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 700
Number of HSP's gapped (non-prelim): 24
length of query: 353
length of database: 12,070,560
effective HSP length: 82
effective length of query: 271
effective length of database: 9,696,496
effective search space: 2627750416
effective search space used: 2627750416
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)
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