Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000318-TA|BGIBMGA000318-PA|undefined
         (85 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    25   1.1  
SPBC1105.18c ||SPBC887.21c|peptide release factor|Schizosaccharo...    23   8.0  

>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 52  AGRTSPTMNRAIFYQLSGGVGAPRSVA 78
           A +TSPT  R ++Y ++  +G   ++A
Sbjct: 422 ASKTSPTAIRGVYYGIAAAIGKCGAIA 448


>SPBC1105.18c ||SPBC887.21c|peptide release
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 23  SSFTRSTEEQRCGARAQVT 41
           S  TRS E+ RC AR ++T
Sbjct: 87  SQDTRSREQNRCIARKRLT 105


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.129    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 304,154
Number of Sequences: 5004
Number of extensions: 8411
Number of successful extensions: 17
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 2
length of query: 85
length of database: 2,362,478
effective HSP length: 60
effective length of query: 25
effective length of database: 2,062,238
effective search space: 51555950
effective search space used: 51555950
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)