GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000318-TA|BGIBMGA000318-PA|undefined
         (85 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   1.8  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   2.4  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       19   9.6  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 1.8
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 26  TRSTEEQRCGARAQVTPQRTLCTDSRAGRTSPT 58
           T   E + CG    V P ++   + +   TSP+
Sbjct: 395 THMKEAKHCGVNVPVPPMQSQIINPQPQITSPS 427


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 20.6 bits (41), Expect = 2.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 42  PQRTLCTDSRAGRTSPTMN 60
           PQRT  T S A   SP+ +
Sbjct: 203 PQRTASTASSASNYSPSQS 221


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 18.6 bits (36), Expect = 9.6
 Identities = 9/32 (28%), Positives = 19/32 (59%)

Query: 47 CTDSRAGRTSPTMNRAIFYQLSGGVGAPRSVA 78
          C++S+A   +P  +  +   ++ GVG+ R+ A
Sbjct: 3  CSESKAICDNPPCDDEVESCIAVGVGSGRNSA 34


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.129    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,294
Number of Sequences: 317
Number of extensions: 451
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 85
length of database: 114,650
effective HSP length: 47
effective length of query: 38
effective length of database: 99,751
effective search space:  3790538
effective search space used:  3790538
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.5 bits)
S2: 36 (18.6 bits)