GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000318-TA|BGIBMGA000318-PA|undefined
         (85 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,650...    27   1.9  
01_04_0116 + 16189250-16189411,16189577-16190104                       26   3.3  
09_02_0166 + 5213693-5213979,5214190-5214506,5214594-5214730           25   5.7  
06_03_0107 + 16709543-16709640,16712555-16713408,16715051-167151...    25   10.0 
04_04_1655 - 35089916-35091157                                         25   10.0 
04_04_1581 - 34581455-34581466,34581525-34581616,34582584-345826...    25   10.0 

>01_01_0832 -
           6500139-6500333,6500610-6500875,6501494-6501815,
           6501915-6502156,6502229-6502457,6503020-6503184,
           6503279-6503605,6504150-6504191,6504333-6504400,
           6504748-6504934,6506249-6506311,6506748-6506790,
           6506919-6507019,6507110-6507184,6507359-6507445,
           6507593-6507682,6507906-6507992,6508585-6508783,
           6509113-6509177,6509502-6509606,6509726-6509871,
           6510100-6510224,6510335-6510437,6510482-6510596,
           6510734-6510869,6511298-6511387,6511484-6511578,
           6511698-6511763,6511868-6511936,6512034-6512147,
           6512241-6512448,6512545-6512600,6512818-6513552
          Length = 1671

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 28  STEEQRCGARAQVTPQRTLCTDSRAGRTSP 57
           S  +Q C + AQV  + T C DS   R  P
Sbjct: 322 SNNDQECQSEAQVVGKSTGCCDSCGNRVPP 351


>01_04_0116 + 16189250-16189411,16189577-16190104
          Length = 229

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 13/32 (40%), Positives = 15/32 (46%)

Query: 21  RSSSFTRSTEEQRCGARAQVTPQRTLCTDSRA 52
           RSS   RST  +RC     + P  T C  S A
Sbjct: 90  RSSLEERSTSSRRCSGTTSLCPTHTPCIASLA 121


>09_02_0166 + 5213693-5213979,5214190-5214506,5214594-5214730
          Length = 246

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 35 GARAQVTPQRTLCTDSRAGRTSPTMNRAI 63
          GA+    P      DS+  +T+P +NRAI
Sbjct: 60 GAKPAQEPSADAAQDSKRTQTAPRLNRAI 88


>06_03_0107 +
           16709543-16709640,16712555-16713408,16715051-16715193,
           16715312-16715573,16715835-16716150,16716257-16716383,
           16717088-16717149,16717291-16717374,16717438-16717494,
           16717705-16717768,16718057-16718152
          Length = 720

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 28  STEEQRCGARAQVTPQRTLCTDSRAGRTSPTMNRAI 63
           ST     GA ++ TP+ +L   +   +TS T  RAI
Sbjct: 621 STTIHNTGASSKSTPEISLADKTPTEKTSSTTKRAI 656


>04_04_1655 - 35089916-35091157
          Length = 413

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 30  EEQRCGARAQVTPQRTLCTDSRAGRTSPTM 59
           + ++CG R +   + TL   +RA R SP +
Sbjct: 373 QSEQCGERTRERARETLRLHARAWRNSPCL 402


>04_04_1581 -
           34581455-34581466,34581525-34581616,34582584-34582686,
           34583761-34583837,34583913-34583959,34584494-34584594,
           34584751-34584840,34585152-34585271,34586171-34586517,
           34587013-34587285,34587835-34588165
          Length = 530

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 1/66 (1%)

Query: 6   GGLVRCGGPVVVSLARSSSFTRSTEEQRCGARAQVTPQRTLCTDSRAGRTSPTMNRAIFY 65
           GGL+    P  VS   +    R    + CG   +  P    C  +RA  T+    R +  
Sbjct: 229 GGLLTNTAPATVSQIHARCRRRQIY-RCCGLLPRAPPPSDPCAFARATITAARSARGLLS 287

Query: 66  QLSGGV 71
            L GG+
Sbjct: 288 HLYGGL 293


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.129    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,503,724
Number of Sequences: 37544
Number of extensions: 82854
Number of successful extensions: 174
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 169
Number of HSP's gapped (non-prelim): 6
length of query: 85
length of database: 14,793,348
effective HSP length: 64
effective length of query: 21
effective length of database: 12,390,532
effective search space: 260201172
effective search space used: 260201172
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)