GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000318-TA|BGIBMGA000318-PA|undefined
         (85 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11478| Best HMM Match : Toxin_11 (HMM E-Value=1.8)                  28   1.2  
SB_36514| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.9  
SB_26384| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.9  
SB_54090| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.5e-05)           26   5.0  
SB_5495| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   6.6  
SB_52189| Best HMM Match : DUF454 (HMM E-Value=5.7)                    25   8.8  
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)                 25   8.8  
SB_11387| Best HMM Match : MFS_1 (HMM E-Value=4.4e-06)                 25   8.8  
SB_54617| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.8  

>SB_11478| Best HMM Match : Toxin_11 (HMM E-Value=1.8)
          Length = 392

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 20/68 (29%), Positives = 24/68 (35%)

Query: 15  VVVSLARSSSFTRSTEEQRCGARAQVTPQRTLCTDSRAGRTSPTMNRAIFYQLSGGVGAP 74
           V VSL R SS      E        V  QR  CT   +  TSP     +  Q    V A 
Sbjct: 68  VSVSLCRGSSLGSPAVEAPGAVHGSVKAQRIECTSDASTMTSPDCTGCLEKQAEFSVSAD 127

Query: 75  RSVAERSN 82
            +    +N
Sbjct: 128 LTCPNATN 135


>SB_36514| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 69

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 41 TPQRTLCTDSRAGRTSPTMNRAIFYQLSGGVGAPRS 76
          TP R  C   RA R+ P ++      L+GG  APR+
Sbjct: 6  TPWRANCL-RRASRSVPDLSNRARSPLNGGANAPRN 40


>SB_26384| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 23 SSFTRSTEEQRCGARAQVTPQRTLCTDSRAGRTSPTMNRAIFYQLSGGVGAPRSVAER 80
          +S  R +E  RC AR     +RTL  D    RT    +      +   +G PRS+  R
Sbjct: 2  ASMRRRSEAPRCFARRLTLFKRTLHADLSGARTERAHD---VIAMQSVIGPPRSLGTR 56


>SB_54090| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.5e-05)
          Length = 700

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 18/52 (34%), Positives = 23/52 (44%)

Query: 1   MALGKGGLVRCGGPVVVSLARSSSFTRSTEEQRCGARAQVTPQRTLCTDSRA 52
           M   K  L +  G V+V  A  ++F   T   RCGAR      R   T+ RA
Sbjct: 310 MCACKSSLPQLSGYVIVLGAGDTAFDCCTSALRCGARRVFVVFRKGFTNIRA 361


>SB_5495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 247

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 21 RSSSFTRSTEEQRCGARAQVTPQRTLCTDSRAGRTSPTMNRAIFYQLSGGVGAPRSVAE 79
          R+ S T   E ++  A+A+   +RT  TDS+  R      R  F     G+ A  S++E
Sbjct: 2  RNPSLTFEEESRKNTAKARQRRRRTFYTDSQLRRMEEVFERDRF----PGIAARESLSE 56


>SB_52189| Best HMM Match : DUF454 (HMM E-Value=5.7)
          Length = 203

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 17/55 (30%), Positives = 24/55 (43%)

Query: 15  VVVSLARSSSFTRSTEEQRCGARAQVTPQRTLCTDSRAGRTSPTMNRAIFYQLSG 69
           V+ +L    S TR      CG R Q+T +R   + SR  R +        + LSG
Sbjct: 114 VLGALPLPRSLTRCARSFGCGERYQLTQRRACPSSSRWPRQAYQSTCDEVFHLSG 168


>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
          Length = 2436

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 18/65 (27%), Positives = 27/65 (41%)

Query: 20   ARSSSFTRSTEEQRCGARAQVTPQRTLCTDSRAGRTSPTMNRAIFYQLSGGVGAPRSVAE 79
            A+S     +T+E R GA+     Q  + T      +  T    I  +    V  P+ VA 
Sbjct: 1927 AQSLKTAEATDEGREGAKESFIRQLEMTTSDLEDSSESTPLSVIQEEEEDEVTEPQGVAS 1986

Query: 80   RSNMT 84
            RS+ T
Sbjct: 1987 RSSRT 1991


>SB_11387| Best HMM Match : MFS_1 (HMM E-Value=4.4e-06)
          Length = 815

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 42  PQRTLCTDSRAGR-TSPTMNRAIFYQLSGGVGA 73
           P R L  D  AG  T P + + +++ L GG+GA
Sbjct: 726 PVRGLILDPVAGTDTRPRILQGVYWGLGGGLGA 758


>SB_54617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 55

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 22 SSSFTRSTEEQRCGARAQVTPQRTLCTDSRAGRT 55
          S + T S + + CG RA VTP  +   DS +G T
Sbjct: 13 SLNTTLSKKTRECGTRALVTP--SAMNDSMSGST 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.129    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,580,186
Number of Sequences: 59808
Number of extensions: 73179
Number of successful extensions: 167
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 163
Number of HSP's gapped (non-prelim): 9
length of query: 85
length of database: 16,821,457
effective HSP length: 62
effective length of query: 23
effective length of database: 13,113,361
effective search space: 301607303
effective search space used: 301607303
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)