GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000318-TA|BGIBMGA000318-PA|undefined
         (85 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC...    25   8.2  
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC...    25   8.2  

>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
           contains similarity to splicing factor; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 303

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 12/46 (26%), Positives = 23/46 (50%)

Query: 18  SLARSSSFTRSTEEQRCGARAQVTPQRTLCTDSRAGRTSPTMNRAI 63
           S +RS S + +    R  +  + +P R +  D R+   SP+  R++
Sbjct: 207 SHSRSLSASPARRSPRSSSPQKTSPAREVSPDKRSNERSPSPRRSL 252


>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
           contains similarity to splicing factor; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 303

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 12/46 (26%), Positives = 23/46 (50%)

Query: 18  SLARSSSFTRSTEEQRCGARAQVTPQRTLCTDSRAGRTSPTMNRAI 63
           S +RS S + +    R  +  + +P R +  D R+   SP+  R++
Sbjct: 207 SHSRSLSASPARRSPRSSSPQKTSPAREVSPDKRSNERSPSPRRSL 252


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.129    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,777,808
Number of Sequences: 28952
Number of extensions: 53336
Number of successful extensions: 96
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94
Number of HSP's gapped (non-prelim): 2
length of query: 85
length of database: 12,070,560
effective HSP length: 64
effective length of query: 21
effective length of database: 10,217,632
effective search space: 214570272
effective search space used: 214570272
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)