GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000317-TA|BGIBMGA000317-PA|undefined
         (161 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    27   0.10 
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   3.8  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   6.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   6.7  
AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esteras...    20   8.8  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 26.6 bits (56), Expect = 0.10
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 2/38 (5%)

Query: 126  PGDNFSYDSFQ--EWDGPLEPHWSSQPTSREIKCEENY 161
            PG   +Y  +Q  EW  P+ P     P   E+K +  Y
Sbjct: 1360 PGSTTNYPEWQPTEWHPPIPPTSEKPPLPEELKPQSGY 1397


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 44  SSFNGESG--ARHGNSTEYTVSESRAEMVRSERERLHTETRRSPPEEKRPPLVPLP 97
           SS NG +     +G S+    S     +  S+R+R  T+   S P    PPL P P
Sbjct: 68  SSLNGLTNNVPSNGLSSSGPFSSIGGGISASKRQR--TDDWLSSPSGNVPPLTPSP 121


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query: 90  RPPLVPLPAFQQAF 103
           RPP+ P PA Q  +
Sbjct: 161 RPPMYPFPAGQYPY 174


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query: 90  RPPLVPLPAFQQAF 103
           RPP+ P PA Q  +
Sbjct: 53  RPPMYPFPAGQYPY 66


>AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 8/26 (30%), Positives = 13/26 (50%)

Query: 51  GARHGNSTEYTVSESRAEMVRSERER 76
           GA HG+   Y  +    +  R+ R+R
Sbjct: 441 GAAHGDDVPYIFNMGLFDTSRNHRDR 466


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.311    0.129    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,013
Number of Sequences: 317
Number of extensions: 1801
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 161
length of database: 114,650
effective HSP length: 52
effective length of query: 109
effective length of database: 98,166
effective search space: 10700094
effective search space used: 10700094
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (20.9 bits)
S2: 40 (20.2 bits)