Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000317-TA|BGIBMGA000317-PA|undefined
(161 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 29 0.25
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 27 1.0
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 26 3.1
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 4.1
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 25 4.1
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 25 5.5
SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|... 25 7.2
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 24 9.5
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 24 9.5
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 29.5 bits (63), Expect = 0.25
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 103 FGSTEIGKFAEAFSRAEIALDDVPGDNFSYDSFQEWDGPLEPHWSSQPTSREIKCEENY 161
F + I A +F+ +E A D GD+F YD + H S P S E++ Y
Sbjct: 53 FNRSNISSTAPSFAESEDAED---GDSFPYDQTLSNSSSFDDHQSLLPFSTEVRRTPTY 108
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 27.5 bits (58), Expect = 1.0
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 13/78 (16%)
Query: 27 YLSQDGRSATPYPMYGDS-------SFNGESGAR----HGNSTEYTVSESRAEMVRSERE 75
Y +G YPMYGDS SFN +G R N+ T S S A S
Sbjct: 695 YAPNNGMMNMHYPMYGDSRRSNSQRSFNSSNGKRSNVHKNNNASNTFSHSNASTSSSLNA 754
Query: 76 RLHTETRRSPPEEKRPPL 93
+T + S + PP+
Sbjct: 755 APNTTAKSS--SQTAPPV 770
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 3.1
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 44 SSFNGESGARHGNSTEYTVSESRAEMVRSERERLHTETRRSPPEEKR 90
SS NG++ + N T Y+ SR R+ + E R+S E R
Sbjct: 441 SSINGKASSESANGTSYSKGSSR----RNSKNETDEEKRKSFLERNR 483
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect = 4.1
Identities = 13/33 (39%), Positives = 14/33 (42%)
Query: 20 PHMNVQNYLSQDGRSATPYPMYGDSSFNGESGA 52
P N Y+ D T Y DSSF G GA
Sbjct: 1368 PVSNASLYMPSDYNQQTQPANYYDSSFGGAQGA 1400
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 25.4 bits (53), Expect = 4.1
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 83 RSPPEEKRPPLVPLPAFQQAFGSTEIGKFAEAFSRAEIALDDVPGDNFSYDSFQEWDGPL 142
RSP + R P+ AF Q+ S E K + +RA + SY+SF E + PL
Sbjct: 178 RSPGDRFRV-FSPVNAFLQSPLSNEQKKKRDKETRAMASFSKPSDYLMSYESFIEDEYPL 236
Query: 143 EP 144
P
Sbjct: 237 HP 238
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 25.0 bits (52), Expect = 5.5
Identities = 13/53 (24%), Positives = 23/53 (43%)
Query: 6 SAYCEPHMWTPYQGPHMNVQNYLSQDGRSATPYPMYGDSSFNGESGARHGNST 58
SA E H+W + + + N+ ++ G+ +P F +S A N T
Sbjct: 656 SATVEKHIWERKENDLIKISNHSTEYGKDFVTFPTSSLLRFYRKSMATESNWT 708
>SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 24.6 bits (51), Expect = 7.2
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 5/72 (6%)
Query: 3 NRGSAYCEPHMW-----TPYQGPHMNVQNYLSQDGRSATPYPMYGDSSFNGESGARHGNS 57
N GS Y + W P ++ + DG S + Y D SF+G + G +
Sbjct: 247 NFGSGYTDGKTWLSMSFNPLSSAKLDYNIRIKSDGGSLSGDCYYEDGSFHGSTADSSGCT 306
Query: 58 TEYTVSESRAEM 69
T + E+
Sbjct: 307 VSVTGGNAYFEL 318
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 24.2 bits (50), Expect = 9.5
Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 112 AEAFSRAEIALDDVPGDNFSYDSFQEWDGPLEPHWSSQ---PTSREIKCEEN 160
A R + ++P SY++F W + +S+Q ++R++K +N
Sbjct: 49 ASLVKRRMLVSVEIPSKEKSYNAFLHWMSTVPKRYSNQLAVESNRQLKMPQN 100
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 24.2 bits (50), Expect = 9.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 27 YLSQDGRSATPYPMYGDSS 45
YL QDG+ PYP + +S
Sbjct: 647 YLKQDGKRRDPYPYWHRNS 665
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.311 0.129 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 829,206
Number of Sequences: 5004
Number of extensions: 33448
Number of successful extensions: 69
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 64
Number of HSP's gapped (non-prelim): 9
length of query: 161
length of database: 2,362,478
effective HSP length: 68
effective length of query: 93
effective length of database: 2,022,206
effective search space: 188065158
effective search space used: 188065158
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 50 (24.2 bits)
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