GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000317-TA|BGIBMGA000317-PA|undefined
         (161 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09210.1 68418.m01043 hypothetical protein                          31   0.49 
At5g44760.1 68418.m05486 C2 domain-containing protein contains I...    30   0.86 
At5g27890.1 68418.m03347 expressed protein                             29   1.1  
At2g24070.1 68415.m02875 expressed protein contains Pfam domain,...    29   2.0  
At5g45330.1 68418.m05564 expressed protein ; expression supporte...    27   4.6  
At3g53640.1 68416.m05925 protein kinase family protein contains ...    27   4.6  
At5g57610.1 68418.m07197 protein kinase family protein similar t...    27   8.0  
At5g24030.1 68418.m02823 C4-dicarboxylate transporter/malic acid...    27   8.0  
At5g13210.1 68418.m01516 expressed protein                             27   8.0  
At4g01800.1 68417.m00237 preprotein translocase secA subunit, pu...    27   8.0  
At3g05050.1 68416.m00548 protein kinase family protein contains ...    27   8.0  

>At5g09210.1 68418.m01043 hypothetical protein
          Length = 603

 Score = 30.7 bits (66), Expect = 0.49
 Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 5/120 (4%)

Query: 24  VQNYLSQDGRSATPYPMYGDSSFNGESGARHGNSTEYTVSE-SRAEMVRSERERLHTETR 82
           +++ +  DG S     + GDSS + ES        E   S   RA+ + S+   +++E  
Sbjct: 248 IEDQMKVDGYSLI---VEGDSSTDDESDCETSAYEEARDSLLQRADKIFSDASVVYSELS 304

Query: 83  RSPPEEKRPPLVPLPAFQQAFGSTEIGKFAEAFSRAEIALDDVPGDNFSYDSFQEWDGPL 142
           R     KR    P PAF+ A+ S  +      + R E+   D    +  + S   W G L
Sbjct: 305 RVKSIFKRGARHPSPAFRAAYTSLTVPSMYSPYLRLELLRWDPLHQDVDF-SDMNWHGLL 363


>At5g44760.1 68418.m05486 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 478

 Score = 29.9 bits (64), Expect = 0.86
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 22  MNVQNYLSQDGRSATPYP-MYGDSSFNGESGARHGNSTEYTVSESRAEMVRSERERLHTE 80
           + +  Y  +  RS  PYP +  D  F   S    GN  E T+  +  E++   R  +   
Sbjct: 59  VTIGRYKGRTKRSTNPYPNLEFDEVFAFNSDRLQGNMLEVTMKMNEEEIIGQCRFEVAEI 118

Query: 81  TRRSPPEEKRPP 92
             R PP+    P
Sbjct: 119 PTRIPPDSPLAP 130


>At5g27890.1 68418.m03347 expressed protein
          Length = 399

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 29  SQDGRSATPYPMYGDSSFNGESGARHGNSTEYTVSESRAEMVRSERERLHTETRRSPPEE 88
           S+ G+++   P+Y D+ F  +S      +    V+E +  + +     +    RR+  E+
Sbjct: 181 SEMGKASRQIPIYVDT-FGEDSSVETDVNVSAVVTEQQQVVTKVSESGVIETNRRAASED 239

Query: 89  KRPPLVPLPAFQQAFGSTEIGKFAEAFSRAE 119
           +   L    A ++A    E  K ++ FSRAE
Sbjct: 240 RMTRLSDAQARKKASELLESLKKSDNFSRAE 270


>At2g24070.1 68415.m02875 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 609

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 56  NSTEYTVSESRAEMVRSERERLHTETRRSPPEEKRPPL 93
           +ST+ T+  S + +   ++    + TR+  PE KR PL
Sbjct: 153 SSTDRTLRPSSSNIAHKQQSETTSVTRKQTPERKRSPL 190


>At5g45330.1 68418.m05564 expressed protein ; expression supported
           by MPSS
          Length = 571

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 14/42 (33%), Positives = 19/42 (45%)

Query: 84  SPPEEKRPPLVPLPAFQQAFGSTEIGKFAEAFSRAEIALDDV 125
           SP   + P  VP P+     G T IG F    S+ EI  + +
Sbjct: 10  SPSSSQPPSSVPSPSPGNNVGDTFIGSFISLISKYEIRYEGI 51


>At3g53640.1 68416.m05925 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 642

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 5/70 (7%)

Query: 26  NYLSQDGRSATPYPMYGDSSFNGESGARHGNSTEYTVS---ESRAEMV--RSERERLHTE 80
           ++L +DG     YP  G+   +GE     G + +   S   ES  +    RS R++  + 
Sbjct: 42  HHLDEDGNEKNVYPFLGNPGNDGELDLEEGENLKKKGSIDRESNRDNYRGRSSRDKARSS 101

Query: 81  TRRSPPEEKR 90
           +R +  E +R
Sbjct: 102 SRETGRENER 111


>At5g57610.1 68418.m07197 protein kinase family protein similar to
            protein kinase [Glycine max] GI:170047, MAP3K delta-1
            protein kinase [Arabidopsis thaliana] GI:2253010;
            contains Pfam profile: PF00069 Eukaryotic protein kinase
            domain
          Length = 1054

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 137  EWDGPLEPHWSSQPTSR 153
            EW G +E  W+S+PT R
Sbjct: 1018 EWKGLMESCWTSEPTER 1034


>At5g24030.1 68418.m02823 C4-dicarboxylate transporter/malic acid
           transport family protein weak similarity to SP|P25396
           Tellurite resistance protein tehA. {Escherichia coli};
           contains Pfam profile PF03595: C4-dicarboxylate
           transporter/malic acid transport protein
          Length = 635

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 132 YDSFQEWDGPLEPHWSSQPTSRE 154
           Y+SF+ W G LE  ++ +P S E
Sbjct: 182 YNSFKTWSGKLERQFTRKPASVE 204


>At5g13210.1 68418.m01516 expressed protein
          Length = 673

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 10/40 (25%), Positives = 23/40 (57%)

Query: 114 AFSRAEIALDDVPGDNFSYDSFQEWDGPLEPHWSSQPTSR 153
           +F +A +  + +    F+ +SF E++G +E H++ +   R
Sbjct: 305 SFDKATLLCESIARKIFTRESFPEYEGVVEAHYAYRVRDR 344


>At4g01800.1 68417.m00237 preprotein translocase secA subunit,
           putative similar to preprotein translocase secA subunit,
           chloroplast [precursor] SP:Q9SYI0 from [Arabidopsis
           thaliana]; non-consensus GA donor splice site at exon 4
          Length = 1022

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 10/27 (37%), Positives = 19/27 (70%)

Query: 68  EMVRSERERLHTETRRSPPEEKRPPLV 94
           E++ S+R+R++TE RR+   +   PL+
Sbjct: 796 EVLNSQRDRVYTERRRALVSDSLEPLI 822


>At3g05050.1 68416.m00548 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 593

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 129 NFSYDSFQEWDGPLEPHWSSQPTSR 153
           ++S + FQ W GPL P  +   T+R
Sbjct: 547 SYSKEPFQTWSGPLAPIGAPDSTTR 571


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.311    0.129    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,409,341
Number of Sequences: 28952
Number of extensions: 180530
Number of successful extensions: 403
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 395
Number of HSP's gapped (non-prelim): 11
length of query: 161
length of database: 12,070,560
effective HSP length: 76
effective length of query: 85
effective length of database: 9,870,208
effective search space: 838967680
effective search space used: 838967680
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 56 (26.6 bits)