GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000315-TA|BGIBMGA000315-PA|undefined
         (130 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    27   0.075
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    27   0.075
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    23   1.2  

>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 26.6 bits (56), Expect = 0.075
 Identities = 9/36 (25%), Positives = 23/36 (63%)

Query: 89  NHSHQITVLVITMTILFSACILAAICFVEMRMRKET 124
           N  HQ++++V ++ ++FSA     +  + ++ R++T
Sbjct: 49  NEGHQLSIIVYSILMVFSAIANTTVLVLIVKRRRKT 84


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 26.6 bits (56), Expect = 0.075
 Identities = 9/36 (25%), Positives = 23/36 (63%)

Query: 89  NHSHQITVLVITMTILFSACILAAICFVEMRMRKET 124
           N  HQ++++V ++ ++FSA     +  + ++ R++T
Sbjct: 49  NEGHQLSIIVYSILMVFSAIANTTVLVLIVKRRRKT 84


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
          protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 27 LPEAVVAIPEEPHDHNESIWSGVKTECSRDQDAT 60
          LPE  +  P+ P +H E+  S   ++C  D   T
Sbjct: 29 LPETALEAPKSPENHPETELS--DSDCDLDVTGT 60


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.129    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,933
Number of Sequences: 317
Number of extensions: 1202
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 130
length of database: 114,650
effective HSP length: 50
effective length of query: 80
effective length of database: 98,800
effective search space:  7904000
effective search space used:  7904000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
S2: 39 (19.8 bits)