GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000315-TA|BGIBMGA000315-PA|undefined
         (130 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    27   0.71 
SPCC1919.08c |mrpl33||mitochondrial ribosomal protein subunit Ym...    26   1.6  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    24   8.7  
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|...    24   8.7  
SPAC23C11.17 |||mitochondrial inner membrane protein involved in...    24   8.7  

>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 27.5 bits (58), Expect = 0.71
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 42  NESIWSGVKTECSRDQDATSIASSTHF 68
           NE  W+G+  E    +D  S+ S T F
Sbjct: 352 NEEEWNGINEEAEESEDEESVNSDTSF 378


>SPCC1919.08c |mrpl33||mitochondrial ribosomal protein subunit
          YmL33|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 97

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 12/28 (42%), Positives = 19/28 (67%)

Query: 47 SGVKTECSRDQDATSIASSTHFTVVNGY 74
          S VK + +  Q+  S+ASS+ FTV++ Y
Sbjct: 57 STVKQKLAAGQEKKSLASSSGFTVIHRY 84


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 23.8 bits (49), Expect = 8.7
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 29  EAVVAIPEEPHDHNESIWSGVKTECSRDQ-DATSIASSTHFTVVNGYTKQCPNKENKSCC 87
           +AV+A+    +D NE   S  K  CS+     T I S     + N Y  +       S C
Sbjct: 806 KAVIALEATNYDVNEVSDSDSKLSCSKYMCSFTFIYSDFTSNITNNYRPRIYYLAQFSVC 865

Query: 88  CNHS 91
            N S
Sbjct: 866 ENQS 869


>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 23.8 bits (49), Expect = 8.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 26  ALPEAVVAIPEEPHDHNES 44
           ++P +V + P+ PH H ES
Sbjct: 87  SMPSSVCSSPKSPHRHYES 105


>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
           potassium ion transport|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 23.8 bits (49), Expect = 8.7
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 24  KYALPEAVVAIPEE-PHDHNESIWSGVKTECSRDQDATSIASSTHFTVVNGYTKQCPNKE 82
           K+ +P  ++ +     + +NE  +   + +  +D  A+      H TVV+  TKQ  NKE
Sbjct: 371 KHGIPSVILMLSNAFSYGYNEGTYDS-RWDALQDTLASIPDELYHETVVDMPTKQVSNKE 429


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.129    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 607,897
Number of Sequences: 5004
Number of extensions: 22197
Number of successful extensions: 56
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 53
Number of HSP's gapped (non-prelim): 5
length of query: 130
length of database: 2,362,478
effective HSP length: 66
effective length of query: 64
effective length of database: 2,032,214
effective search space: 130061696
effective search space used: 130061696
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 49 (23.8 bits)