Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000315-TA|BGIBMGA000315-PA|undefined
(130 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0917 + 9033451-9036136,9036373-9036722 33 0.056
01_06_0530 + 30035854-30036765 33 0.074
05_06_0192 - 26273599-26274543 33 0.097
10_08_1010 + 22230329-22230658,22231033-22231298,22231411-222315... 29 1.6
06_01_0121 - 932334-933074,933189-933272,934602-935006 28 2.1
02_05_1324 - 35702184-35702267,35702405-35702476,35702675-357027... 28 2.1
08_01_0914 + 9010613-9013316,9013537-9013748 28 2.8
08_01_0913 + 8995491-8995926,8995976-8997352,8997431-8998174,899... 28 2.8
06_01_0128 - 1002544-1002918,1003059-1003160 27 3.7
11_01_0062 - 476027-476044,476791-477195,477287-477574,477653-47... 27 6.4
04_04_0284 + 24133397-24133483,24133843-24133979,24134311-241345... 26 8.5
>08_01_0917 + 9033451-9036136,9036373-9036722
Length = 1011
Score = 33.5 bits (73), Expect = 0.056
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 78 CPNKENKSCCCNHSHQITVLVITMTILFSACILAAICFVEMRMR 121
CP+K++ + H + + I T++FS + A CF++ RM+
Sbjct: 637 CPSKDSDQASVHRLH-VLIFCIVGTLIFSLFCMTAYCFIKTRMK 679
>01_06_0530 + 30035854-30036765
Length = 303
Score = 33.1 bits (72), Expect = 0.074
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 28 PEAVVAIPEEPHDHNES-IWSGVKTECSRDQDA-TSIASSTHFTVVN 72
P V A P D +ES +WS +K E RD DA ++AS + TV++
Sbjct: 23 PAVVPAYPPPESDADESWVWSQIKAEARRDADAEPALASFLYATVLS 69
>05_06_0192 - 26273599-26274543
Length = 314
Score = 32.7 bits (71), Expect = 0.097
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 26 ALPEAVVAI--PEEPHDHNESIWSGVKTECSRDQDA-TSIASSTHFTVVN 72
+LP VV P E D +WS +K E RD DA ++AS + TV++
Sbjct: 26 SLPAEVVPAFAPPESEDEESWVWSQIKAEARRDADAEPALASFLYATVLS 75
>10_08_1010 +
22230329-22230658,22231033-22231298,22231411-22231528,
22231842-22232050,22232297-22232750
Length = 458
Score = 28.7 bits (61), Expect = 1.6
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 46 WSGVKTECSRDQDATSIASSTHFTVVNGYTKQCPNK-ENKSCCCNHSHQITVLVITMTIL 104
+ G + S D D S+ S ++ +V GY + P+ E C +H+ L I +T
Sbjct: 237 YQGTSSTLSYDSDLASLVSKSNVVIVEGYLFELPHTIEAIKQACEDAHKNGSL-IAVTAS 295
Query: 105 FSACI 109
+CI
Sbjct: 296 DVSCI 300
>06_01_0121 - 932334-933074,933189-933272,934602-935006
Length = 409
Score = 28.3 bits (60), Expect = 2.1
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 47 SGVKTECSRDQDATSIASSTHFTVVNGYTKQCPNKENKSCCCNHS 91
SG + CS+D ++A TH + G + P K + +C N+S
Sbjct: 361 SGGEASCSQDTTEAAVAGLTHDRCIGGPCPE-PYKNSGNCSGNNS 404
>02_05_1324 -
35702184-35702267,35702405-35702476,35702675-35702740,
35702826-35702857,35702941-35703100,35703254-35703389,
35703453-35703598,35703827-35704072,35704152-35704259,
35704436-35704557,35704730-35704820,35704903-35705133,
35705212-35705355,35705875-35705951,35706158-35706281,
35706368-35706535,35706625-35706948
Length = 776
Score = 28.3 bits (60), Expect = 2.1
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 7 NTEELGPYHSKFGGYERKYALPEAVVAIPEEPHDHNESIW-SGVKTECSRDQDATSIA 63
N E+L PY + + ++L + + EP D +W S VK C +D + +A
Sbjct: 426 NEEDLRPYFALPKVMDGLFSLANRLFGVSVEPADGLAPVWNSDVKFYCVKDSSNSPVA 483
>08_01_0914 + 9010613-9013316,9013537-9013748
Length = 971
Score = 27.9 bits (59), Expect = 2.8
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 90 HSHQITVLVITMTILFSACILAAICFVEMRMR 121
H + + I T++ S C + A CF++ +M+
Sbjct: 654 HRLHVLIFCIVGTLISSMCCMTAYCFIKRKMK 685
>08_01_0913 +
8995491-8995926,8995976-8997352,8997431-8998174,
8998402-8998748
Length = 967
Score = 27.9 bits (59), Expect = 2.8
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 90 HSHQITVLVITMTILFSACILAAICFVEMRMR 121
H + + I T++FS + A CF++ RM+
Sbjct: 606 HRLHVLIFCIAGTLIFSLFCMTAYCFIKTRMK 637
>06_01_0128 - 1002544-1002918,1003059-1003160
Length = 158
Score = 27.5 bits (58), Expect = 3.7
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 47 SGVKTECSRDQDATSIASSTHFTVVNGYTKQCPNKENKSCCCNHS 91
SG K CS+D ++A TH + G CP S C+ +
Sbjct: 111 SGGKASCSQDTTEAAVAGLTHDRYIGG---PCPETYKNSGKCSRN 152
>11_01_0062 -
476027-476044,476791-477195,477287-477574,477653-477830,
478005-478133,478531-478729,478832-478970,479130-479195,
480459-480580,480672-480742,480819-480903,481335-481453,
481577-481687,481945-482117,482375-482446,482768-482862,
483361-483450,483550-483646
Length = 818
Score = 26.6 bits (56), Expect = 6.4
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 27 LPEAVVAIPEEPHDHNESIWSGVKTECSRDQDATS 61
+P +VV PE DH ++S +K E RDQ TS
Sbjct: 779 VPGSVVVRPERKLDHAWMVYSSLKEE-PRDQADTS 812
>04_04_0284 +
24133397-24133483,24133843-24133979,24134311-24134599,
24134723-24134829,24134905-24135052,24135260-24135458,
24135545-24135785,24135888-24135984,24136413-24136492,
24136533-24136551
Length = 467
Score = 26.2 bits (55), Expect = 8.5
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 41 HNESIWSGVKTECSRDQDATSIASSTHFTVVNGYTKQCPNKENKSCCCNHSHQITVLVIT 100
+ + WS + C+ +D + ++F++++ Q P +NK ++I +L I
Sbjct: 28 YQDGTWSTITGSCTIVRDVKDLLFHSYFSIMDDLRLQAP-PDNK------PYEIRLLDIP 80
Query: 101 MTILFSAC--ILAAICFVEMRMRK 122
+L +AC IL I F + + K
Sbjct: 81 GALLSAACGLILDGIMFTLIAIYK 104
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.129 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,766,801
Number of Sequences: 37544
Number of extensions: 134582
Number of successful extensions: 343
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 338
Number of HSP's gapped (non-prelim): 11
length of query: 130
length of database: 14,793,348
effective HSP length: 74
effective length of query: 56
effective length of database: 12,015,092
effective search space: 672845152
effective search space used: 672845152
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)
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