Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000315-TA|BGIBMGA000315-PA|undefined
(130 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32278| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.52
SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30) 29 1.2
SB_45368| Best HMM Match : fn2 (HMM E-Value=3.1e-32) 27 3.7
SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0) 27 3.7
SB_46305| Best HMM Match : SSDP (HMM E-Value=2) 27 4.9
SB_36998| Best HMM Match : TUDOR (HMM E-Value=0) 27 4.9
SB_25297| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_8861| Best HMM Match : Mu-conotoxin (HMM E-Value=2.4e-05) 27 6.4
SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028) 26 8.5
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 26 8.5
>SB_32278| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 30.3 bits (65), Expect = 0.52
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 46 WSGVKTECSRDQDATSIASSTHFTVVNGYTKQCPNKENKSCCCNHSHQITVLVIT 100
WSG E S D+D S V NGY + C +E + C +H V IT
Sbjct: 102 WSGADEEVSYDRDGIS-----QMCVTNGY-EVCETREKDTPCVGENHANFVYKIT 150
>SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)
Length = 3015
Score = 29.1 bits (62), Expect = 1.2
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 15 HSKFGGYERKYALPEAVVAIPEEPHDHNESIWSG-VKTECSRD-QDATSIASSTHFTVVN 72
+ +F YE P V ++ + +DH+E G +K S QD T++ +++
Sbjct: 1932 NQEFASYE-----PSGVTSVKKTSNDHSEIPAKGLIKNNVSNGYQDVTNLEKIQSSSILE 1986
Query: 73 GYTKQCPNKENKSCC 87
+KENKSCC
Sbjct: 1987 SDV----DKENKSCC 1997
>SB_45368| Best HMM Match : fn2 (HMM E-Value=3.1e-32)
Length = 1206
Score = 27.5 bits (58), Expect = 3.7
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 12 GPYHSKFGGYERKYALPEAVVAIPEEPHDHNESIWSGVKTECSRDQDATSIAS 64
GP+ S Y+R Y + +V ++ D SI++ TE + +IAS
Sbjct: 283 GPWCSLTKNYDRDYLWGDCLVLADDDDPDDCASIYNNTNTEIHWTSNEDAIAS 335
>SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 1981
Score = 27.5 bits (58), Expect = 3.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 1 MSGRSSNTEELGPYHSKFGGYERKYALPEAVVAIPEEPHDHNESI 45
+S +++ ELG H G YE+ A E +++ +E D I
Sbjct: 915 LSSKAAAYGELGTLHKALGNYEQAIAFFEQQLSLAKECSDRENEI 959
>SB_46305| Best HMM Match : SSDP (HMM E-Value=2)
Length = 848
Score = 27.1 bits (57), Expect = 4.9
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 1 MSGRSSNTEELGPYHSKFGGYERKYALPEAVVAIPEEPHDHNES 44
+SGRSS+ E+ Y S+ GY+R+ AVV E NES
Sbjct: 147 LSGRSSD-EDYNFYESQENGYKRRCLDNTAVVKKERESQFINES 189
>SB_36998| Best HMM Match : TUDOR (HMM E-Value=0)
Length = 2538
Score = 27.1 bits (57), Expect = 4.9
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 22 ERKYALPEAVVAIPEEP 38
+ K A+PE VVA+P+EP
Sbjct: 1640 DTKKAIPEEVVAVPQEP 1656
>SB_25297| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 482
Score = 26.6 bits (56), Expect = 6.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 39 HDHNESIWSGVKTECSRDQDATSIASSTH 67
H HNE + +K+ C++ A+ + SS H
Sbjct: 131 HTHNEPVIVQLKSACTQGDQASRLHSSDH 159
>SB_8861| Best HMM Match : Mu-conotoxin (HMM E-Value=2.4e-05)
Length = 440
Score = 26.6 bits (56), Expect = 6.4
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 50 KTECSRDQDATSIASSTHFTVVNGYTKQCP--NKENKSCCCNHSHQITV 96
+++CS A +++ + + + +G+ K C EN+S C H TV
Sbjct: 230 ESDCSGHGSACTVSRNENASDCSGHGKACTVRRNENESDCSGHGSACTV 278
>SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)
Length = 3809
Score = 26.2 bits (55), Expect = 8.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 29 EAVVAIPEEPHDHNESIWSGVKTECSRDQDATSI 62
+ V+++ EE H E + +KTE SR+ D I
Sbjct: 571 DKVLSLSEENLTHKEHLRKEIKTELSRETDFEKI 604
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 26.2 bits (55), Expect = 8.5
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 67 HFTVVNGYTKQCPNKENKSCCCNHSHQITVLVITMTILFSACILAAICFV 116
H+ Y +C + CC H H V+V+ + I+ ++ + V
Sbjct: 46 HYPCYRHYYHRC--YRHHYCCYRHRHNFIVIVLVIIIVVIVIVIIIVVIV 93
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.129 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,632,160
Number of Sequences: 59808
Number of extensions: 171747
Number of successful extensions: 425
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 420
Number of HSP's gapped (non-prelim): 10
length of query: 130
length of database: 16,821,457
effective HSP length: 75
effective length of query: 55
effective length of database: 12,335,857
effective search space: 678472135
effective search space used: 678472135
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)
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