GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000315-TA|BGIBMGA000315-PA|undefined
         (130 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-2807|AAF49408.1|  246|Drosophila melanogaster CG13024-P...    60   7e-10
AY113611-1|AAM29616.1|   65|Drosophila melanogaster RH61817p pro...    44   5e-05
AY071688-1|AAL49310.1|  947|Drosophila melanogaster RH10407p pro...    27   6.0  
AE013599-2836|AAM70845.1|  947|Drosophila melanogaster CG7097-PB...    27   6.0  
AE013599-2835|AAF57595.1| 1218|Drosophila melanogaster CG7097-PA...    27   6.0  

>AE014296-2807|AAF49408.1|  246|Drosophila melanogaster CG13024-PA
           protein.
          Length = 246

 Score = 60.5 bits (140), Expect = 7e-10
 Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 7/94 (7%)

Query: 29  EAVVAIP-EEPHDHNESIWSGVKTECSRDQDATSIASSTHFTVVNGYTKQCPNKENKSCC 87
           +AV+AI  ++P D + ++   VKT   +D D  SIASS HFT+VNG  +  P K+ K   
Sbjct: 154 DAVIAIEGQQPADVDPNL-QYVKT---KDLDTVSIASSMHFTMVNG--EGGPPKKPKRGL 207

Query: 88  CNHSHQITVLVITMTILFSACILAAICFVEMRMR 121
           C+   Q+TVL+++M+ +F   I+  +  +EMR R
Sbjct: 208 CDRGRQVTVLIVSMSTIFMLLIMGMVYALEMRAR 241


>AY113611-1|AAM29616.1|   65|Drosophila melanogaster RH61817p
           protein.
          Length = 65

 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 67  HFTVVNGYTKQCPNKENKSCCCNHSHQITVLVITMTILFSACILAAICFVEMRMR 121
           HFT+VNG  +  P K+ K   C+   Q+TVL+++M+ +F   I+  +  +EMR R
Sbjct: 2   HFTMVNG--EGGPPKKPKRGLCDRGRQVTVLIVSMSTIFMLLIMGMVYALEMRAR 54


>AY071688-1|AAL49310.1|  947|Drosophila melanogaster RH10407p
           protein.
          Length = 947

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 3   GRSSNTEELGPYHSKFGGYERKY---ALPEAVVAIPEEPHDHNESIW--SGVKTECSRDQ 57
           G SSN    G   S   G   K+   ALP+A      +   H+ S    SG     SRD 
Sbjct: 389 GGSSNISSSGGASSGTNGLLDKHELDALPQAATKSAGDGFSHSNSPTANSGAGATGSRDN 448

Query: 58  DATSIASSTH 67
           D  S ++S+H
Sbjct: 449 DGPSSSNSSH 458


>AE013599-2836|AAM70845.1|  947|Drosophila melanogaster CG7097-PB,
           isoform B protein.
          Length = 947

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 3   GRSSNTEELGPYHSKFGGYERKY---ALPEAVVAIPEEPHDHNESIW--SGVKTECSRDQ 57
           G SSN    G   S   G   K+   ALP+A      +   H+ S    SG     SRD 
Sbjct: 389 GGSSNISSSGGASSGTNGLLDKHELDALPQAATKSAGDGFSHSNSPTANSGAGATGSRDN 448

Query: 58  DATSIASSTH 67
           D  S ++S+H
Sbjct: 449 DGPSSSNSSH 458


>AE013599-2835|AAF57595.1| 1218|Drosophila melanogaster CG7097-PA,
           isoform A protein.
          Length = 1218

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 3   GRSSNTEELGPYHSKFGGYERKY---ALPEAVVAIPEEPHDHNESIW--SGVKTECSRDQ 57
           G SSN    G   S   G   K+   ALP+A      +   H+ S    SG     SRD 
Sbjct: 660 GGSSNISSSGGASSGTNGLLDKHELDALPQAATKSAGDGFSHSNSPTANSGAGATGSRDN 719

Query: 58  DATSIASSTH 67
           D  S ++S+H
Sbjct: 720 DGPSSSNSSH 729


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.318    0.129    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,629,254
Number of Sequences: 52641
Number of extensions: 252783
Number of successful extensions: 696
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 693
Number of HSP's gapped (non-prelim): 5
length of query: 130
length of database: 24,830,863
effective HSP length: 77
effective length of query: 53
effective length of database: 20,777,506
effective search space: 1101207818
effective search space used: 1101207818
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)