Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000315-TA|BGIBMGA000315-PA|undefined
(130 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006610-3|AAK85449.1| 264|Caenorhabditis elegans Hypothetical ... 31 0.26
Z50858-2|CAD44134.1| 467|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z50858-1|CAA90721.1| 453|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z35663-16|CAA84726.2| 462|Caenorhabditis elegans Hypothetical p... 29 1.4
AF408757-1|AAO27836.1| 456|Caenorhabditis elegans nucleobindin ... 29 1.4
AF003386-7|AAB54258.2| 412|Caenorhabditis elegans Hypothetical ... 28 1.8
Z98877-5|CAD56616.1| 731|Caenorhabditis elegans Hypothetical pr... 27 3.2
Z98877-4|CAB54473.2| 796|Caenorhabditis elegans Hypothetical pr... 27 3.2
AC006723-6|AAF59425.1| 492|Caenorhabditis elegans Hypothetical ... 27 4.2
AL021572-1|CAA16516.2| 654|Caenorhabditis elegans Hypothetical ... 27 5.6
Z71186-1|CAA94913.1| 301|Caenorhabditis elegans Hypothetical pr... 26 7.4
AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily a... 26 7.4
AC006624-5|AAK68265.1| 418|Caenorhabditis elegans Hypothetical ... 26 7.4
AC132211-3|AAN01436.1| 330|Caenorhabditis elegans Hypothetical ... 26 9.8
>AC006610-3|AAK85449.1| 264|Caenorhabditis elegans Hypothetical
protein C30F12.3 protein.
Length = 264
Score = 31.1 bits (67), Expect = 0.26
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 79 PNKENKSCCCNHSHQITVLVITMTIL 104
PN E CCC H+H +T + I +L
Sbjct: 43 PNHEKYLCCCGHAHSLTGMKIVAGML 68
>Z50858-2|CAD44134.1| 467|Caenorhabditis elegans Hypothetical
protein F44A6.1b protein.
Length = 467
Score = 28.7 bits (61), Expect = 1.4
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 3 GRSSNTEELGPYHSKFGGYERKYA-LPEAVVAIPEEPHDHNESI 45
G++ NTE+ G Y + GY+ Y E VV I E NE +
Sbjct: 49 GQAQNTEQQGEYDGRHPGYQFAYTKYLEEVVKILESDPKFNERL 92
>Z50858-1|CAA90721.1| 453|Caenorhabditis elegans Hypothetical
protein F44A6.1a protein.
Length = 453
Score = 28.7 bits (61), Expect = 1.4
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 3 GRSSNTEELGPYHSKFGGYERKYA-LPEAVVAIPEEPHDHNESI 45
G++ NTE+ G Y + GY+ Y E VV I E NE +
Sbjct: 49 GQAQNTEQQGEYDGRHPGYQFAYTKYLEEVVKILESDPKFNERL 92
>Z35663-16|CAA84726.2| 462|Caenorhabditis elegans Hypothetical
protein T04A8.3 protein.
Length = 462
Score = 28.7 bits (61), Expect = 1.4
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 10 ELGPYHSKFGGYERKYALPEAVVAIPEEPHDHNESIWSGVK 50
++G + S F YE L E ++ + P+D+N ++W G K
Sbjct: 310 DMGAHLSSFTTYEELKLLDEMILEV--YPNDNNIAVWLGAK 348
>AF408757-1|AAO27836.1| 456|Caenorhabditis elegans nucleobindin
protein.
Length = 456
Score = 28.7 bits (61), Expect = 1.4
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 3 GRSSNTEELGPYHSKFGGYERKYA-LPEAVVAIPEEPHDHNESI 45
G++ NTE+ G Y + GY+ Y E VV I E NE +
Sbjct: 52 GQAQNTEQQGEYDGRHPGYQFAYTKYLEEVVKILESDPKFNERL 95
>AF003386-7|AAB54258.2| 412|Caenorhabditis elegans Hypothetical
protein F59E12.8 protein.
Length = 412
Score = 28.3 bits (60), Expect = 1.8
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 66 THFTVVNGYTKQCPNKENKSCCCNHSHQITV-LVITMTILFSACILAAICFVEMRMRKET 124
T F V Y P K H TV L++++T+L A + + FVE + KET
Sbjct: 33 TQFEVNQVYLITDPQKSVDVVFLFHPFSTTVWLLLSLTVLVVAIVFFILRFVEFKSTKET 92
>Z98877-5|CAD56616.1| 731|Caenorhabditis elegans Hypothetical
protein Y69H2.3c protein.
Length = 731
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 75 TKQCPNKENKSCCCNHSHQITVLVITMTILFSACILAAIC 114
T +CP+ E S C ++ +Q + I+M C +C
Sbjct: 674 TTECPDNEEWSKCLSNDNQCDLASISMIANKDQCFSGCVC 713
>Z98877-4|CAB54473.2| 796|Caenorhabditis elegans Hypothetical
protein Y69H2.3b protein.
Length = 796
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 75 TKQCPNKENKSCCCNHSHQITVLVITMTILFSACILAAIC 114
T +CP+ E S C ++ +Q + I+M C +C
Sbjct: 739 TTECPDNEEWSKCLSNDNQCDLASISMIANKDQCFSGCVC 778
>AC006723-6|AAF59425.1| 492|Caenorhabditis elegans Hypothetical
protein Y19D10B.6 protein.
Length = 492
Score = 27.1 bits (57), Expect = 4.2
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 10/77 (12%)
Query: 20 GYERKYALPEAVVAIPEEPHDHNESIWSGVKTECSRDQDATSIASST--------HFTVV 71
GYE ++ + E HN +I++G+ T Q +IA + HF
Sbjct: 260 GYEPEFLFSAFASNMENEAFKHNSAIYAGIVTRSDLQQPMLAIADTVSVLAHELMHFVYP 319
Query: 72 NGYTKQCPN--KENKSC 86
+G PN K K C
Sbjct: 320 SGTELLTPNVTKAAKKC 336
>AL021572-1|CAA16516.2| 654|Caenorhabditis elegans Hypothetical
protein W06H3.1 protein.
Length = 654
Score = 26.6 bits (56), Expect = 5.6
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 22 ERKYALPEAVVAIPEEPHDHNESIWSGVKTECSRDQDATSIASSTHFTVV 71
E+K P P P + NE + +K ++ + AT +A+S +
Sbjct: 125 EKKPENPYIGAKTPLNPQERNEKLTESLKNHLTQAEKATKVATSAKLETI 174
>Z71186-1|CAA94913.1| 301|Caenorhabditis elegans Hypothetical
protein F23D12.1 protein.
Length = 301
Score = 26.2 bits (55), Expect = 7.4
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 65 STHFTVVNGYTKQCPNKE-NKSCCCNHSHQITVLVITMTILFSACILAAICFVEMRMR 121
S HF +G+ PN KSCCC H+ T+ + I F+ C L ++ R
Sbjct: 10 SMHFQHPDGFN---PNDSIYKSCCC-HAKTFTIFIGIFEI-FTICFLLVAVLPDVTTR 62
>AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily
assigned gene nameprotein 80 protein.
Length = 4900
Score = 26.2 bits (55), Expect = 7.4
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 26 ALPEAVVAIPEEPHDHNESIWSGVKTECSRDQDATSIASS 65
+LP A I E+ D +I SG + S DQD T SS
Sbjct: 4113 SLPTAEEPIVEKREDDKSNITSGADYQQSFDQDVTYKRSS 4152
>AC006624-5|AAK68265.1| 418|Caenorhabditis elegans Hypothetical
protein C53D5.1b protein.
Length = 418
Score = 26.2 bits (55), Expect = 7.4
Identities = 11/57 (19%), Positives = 29/57 (50%)
Query: 49 VKTECSRDQDATSIASSTHFTVVNGYTKQCPNKENKSCCCNHSHQITVLVITMTILF 105
V + ++ + AT A + + ++C + + CC+ +I +LV+++ +L+
Sbjct: 14 VPLKMAQGRTATDYAGQDYDECYDRCEQECGEEAWRIACCSRVGKIAILVMSIIVLY 70
>AC132211-3|AAN01436.1| 330|Caenorhabditis elegans Hypothetical
protein Y108F1.5 protein.
Length = 330
Score = 25.8 bits (54), Expect = 9.8
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 61 SIASSTHFTVVNGYTKQCPNKENKSCCCNH 90
++ H T++N +TK N +K C +H
Sbjct: 84 AVEEGNHITMLNVFTKFVENGRSKKWCSDH 113
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.318 0.129 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,361,827
Number of Sequences: 27539
Number of extensions: 127938
Number of successful extensions: 445
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 437
Number of HSP's gapped (non-prelim): 14
length of query: 130
length of database: 12,573,161
effective HSP length: 74
effective length of query: 56
effective length of database: 10,535,275
effective search space: 589975400
effective search space used: 589975400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)
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