GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000315-TA|BGIBMGA000315-PA|undefined
         (130 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27430.1 68415.m03315 expressed protein                             29   0.77 
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex...    29   1.3  
At5g52630.1 68418.m06534 pentatricopeptide (PPR) repeat-containi...    27   4.1  
At3g36659.1 68416.m00783 invertase/pectin methylesterase inhibit...    27   4.1  
At2g38140.1 68415.m04682 chloroplast 30S ribosomal protein S31 (...    27   4.1  
At1g33680.1 68414.m04166 KH domain-containing protein similar to...    27   4.1  
At5g10540.1 68418.m01220 peptidase M3 family protein / thimet ol...    27   5.4  
At3g56410.2 68416.m06274 expressed protein                             26   7.1  
At3g56410.1 68416.m06273 expressed protein                             26   7.1  
At2g45520.1 68415.m05661 expressed protein                             26   9.4  
At2g06860.1 68415.m00768 Ulp1 protease family protein contains P...    26   9.4  

>At2g27430.1 68415.m03315 expressed protein
          Length = 438

 Score = 29.5 bits (63), Expect = 0.77
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 2  SGRSSNTEELGPYHSKFGGYERKYALPEAVVAIPEEPHDHNESI 45
          S R SN + L      +  +E+  ALPE +V+ P  P D NE +
Sbjct: 36 SFRKSNLQALPEKSRTYQDFEKVAALPEEIVSKP--PEDENEEV 77


>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycsimilar to extensin-like protein [Lycopersicon
           esculentum] gi|5917664|gb|AAD55979; contains
           leucine-rich repeats, Pfam:PF00560; contains proline
           rich extensin domains, INTERPRO:IPR002965
          Length = 470

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 6/57 (10%)

Query: 3   GRSSNTEELGPYHSKFGGYERKYALPEAVVAIPE-EPHDHNESIWSGVKTECSRDQD 58
           G   + E+L   H+KF GY     +PE++  +P  E   ++ + +SG    C R Q+
Sbjct: 288 GDMKSLEQLNIAHNKFSGY-----IPESICRLPRLENFTYSYNFFSGEPPACLRLQE 339


>At5g52630.1 68418.m06534 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 588

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 27  LPEAVVAIPEEPHDHNESIWSGVKTECS 54
           L EA+  I   P D  ES+W  + T C+
Sbjct: 369 LQEALEVITNMPIDPTESVWGALLTSCT 396


>At3g36659.1 68416.m00783 invertase/pectin methylesterase inhibitor
           family protein similar to extensin-like protein [Zea
           mays] GI:5917666
          Length = 264

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 26  ALPEAVVAIPEEPHDHNESIWSGVKTECS 54
           A PEA VA PE P + + +  SG+K   S
Sbjct: 88  ASPEAPVASPEAPAESSSAAPSGIKVSSS 116


>At2g38140.1 68415.m04682 chloroplast 30S ribosomal protein S31
          (PSRP4)
          Length = 118

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 26 ALPEAVVAIPEEPHDHNESIWSGVKTECSRDQDATSIASSTHFTVVNGYTKQCPNKENKS 85
          A P   VA+P      + S  +GV   C   Q + S +SS+   +V  Y  +   K  K 
Sbjct: 8  APPRVTVALPSSRLSSSHSETAGVSLSCFTHQFSLSTSSSSSIPLV--YCGRGDRKTAKG 65

Query: 86 CCCNHS 91
             NHS
Sbjct: 66 KRFNHS 71


>At1g33680.1 68414.m04166 KH domain-containing protein similar to
          FUSE binding protein 2 GB:AAC50892 GI:1575607 from
          [Homo sapiens]
          Length = 759

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 29 EAVVAIPEEPHDHNESIWSGVKTECSRDQDATSIASSTHFTVVNGYTKQCPNKENK 84
          E V+AIP +P DH   +   +++E    Q A SI +          +  C  K  K
Sbjct: 4  EEVIAIPVQPSDHKRKL-ENLESEILEQQHAGSIDNDVSVDDDKNASDYCQPKRPK 58


>At5g10540.1 68418.m01220 peptidase M3 family protein / thimet
           oligopeptidase family protein similar to SP|P27237
           Oligopeptidase A (EC 3.4.24.70) {Salmonella
           typhimurium}; contains Pfam profile PF01432: Peptidase
           family M3
          Length = 701

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 7   NTEELGPYHSKFGGYERKYALPEAVVAIPEEPHDHNESIW-SGVKTECSRDQDATSIA 63
           N EEL PY S     +  + L + +  I   P D    +W S V+  C +D      A
Sbjct: 358 NEEELRPYFSLPKVMDALFGLAKTLFGIDVVPADGVAPVWNSDVRFYCVKDSSGNPTA 415


>At3g56410.2 68416.m06274 expressed protein
          Length = 1535

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 3   GRSSNTEELGPYHSKFGGYERKYALPEAVVAIPEEPHDHNES 44
           GRS ++   G ++   GG E +    E+ VAIPE+ H   E+
Sbjct: 918 GRSESSSR-GSFNDD-GGSEERVVFHESQVAIPEQSHYEYEN 957


>At3g56410.1 68416.m06273 expressed protein
          Length = 1488

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 3   GRSSNTEELGPYHSKFGGYERKYALPEAVVAIPEEPHDHNES 44
           GRS ++   G ++   GG E +    E+ VAIPE+ H   E+
Sbjct: 871 GRSESSSR-GSFNDD-GGSEERVVFHESQVAIPEQSHYEYEN 910


>At2g45520.1 68415.m05661 expressed protein
          Length = 205

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 13  PYHSKFGGYERKYALPEAVVAIPEEPHDHNESIWSGVKTECSRDQDATSIASSTHFTVVN 72
           P+ S     E+K  L +A V +P    D ++S+    K +  R+Q  T +        ++
Sbjct: 50  PHDSTKQVVEKKEKLKKAEVVVPATESDGDDSVVEKKKKKRKRNQ-MTDLRFENELAEID 108

Query: 73  GYTKQCPNKE 82
           G +K+   K+
Sbjct: 109 GRSKRKERKK 118


>At2g06860.1 68415.m00768 Ulp1 protease family protein contains
          Pfam profile PF02902: Ulp1 protease family, C-terminal
          catalytic domain
          Length = 938

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 27 LPEAVVAIPEEPHDHNESIWSGVKTEC 53
          LP  ++A+ EEP     +++  +KT C
Sbjct: 6  LPPRLIALGEEPRGERVNVYQKIKTLC 32


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.129    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,165,897
Number of Sequences: 28952
Number of extensions: 117114
Number of successful extensions: 281
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 277
Number of HSP's gapped (non-prelim): 11
length of query: 130
length of database: 12,070,560
effective HSP length: 73
effective length of query: 57
effective length of database: 9,957,064
effective search space: 567552648
effective search space used: 567552648
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)