Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000314-TA|BGIBMGA000314-PA|IPR002345|Lipocalin,
IPR001254|Peptidase S1 and S6, chymotrypsin/Hap, IPR009003|Peptidase,
trypsin-like serine and cysteine
(579 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subun... 33 0.082
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 33 0.082
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 32 0.25
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 31 0.44
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha... 30 0.77
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe... 30 0.77
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 30 1.0
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 29 1.8
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 29 2.3
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 29 2.3
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 28 3.1
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 28 4.1
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 28 4.1
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc... 28 4.1
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||... 28 4.1
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo... 28 4.1
SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 4.1
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 27 5.4
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 27 5.4
SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa... 27 7.1
SPBC800.07c |tsf1||mitochondrial translation elongation factor E... 27 7.1
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 27 7.1
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 27 7.1
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 27 7.1
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 27 9.4
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 27 9.4
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 27 9.4
>SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subunit
Rpc31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 33.5 bits (73), Expect = 0.082
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 116 YKSFKTSGRTSSNKQIILNETSLFTLSTD---QYSEKNENITQLDKLNKSISSKIFHVDP 172
YK +TS S I N S+ + D +YS++N+ + N ++S +DP
Sbjct: 54 YKEIRTSFLDESAFYIRRNPISVVQRNEDGLVRYSDRNKP----KRKNDNLSLSDLDLDP 109
Query: 173 RFLPDKNKKRKGVHNSTANKR 193
+F P++ +K G ++T KR
Sbjct: 110 KFFPEELRKTLGAASATGRKR 130
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 33.5 bits (73), Expect = 0.082
Identities = 35/153 (22%), Positives = 68/153 (44%), Gaps = 12/153 (7%)
Query: 75 TDSHKLVDVKTKIDNVRHNSLRSVNAFYLFDRFFKTPQENLYKSFKTSGRTSSNKQIILN 134
TD+ LV+ K V S S N +R KT E ++ +T RT +N+ I +
Sbjct: 1360 TDNKNLVENKAVEKRVEARS--SANERKQEERRRKTTPEGNRRALRT--RTPTNEDIQRS 1415
Query: 135 ETSLFT-LSTDQY-------SEKNENITQLDKLNKSISSKIFHVDPRFLPDKNKKRKGVH 186
++ L S D+ +E N+N+ + + + + +++ R + K +
Sbjct: 1416 DSKLREDQSRDRTPQSRSFTNENNDNLRSVSRHTRREPQQAQNLNARREHESQKSDRWRQ 1475
Query: 187 NSTANKRITQAENSTSKVFQYRNVDVQHTTTND 219
N N+ + N+++ V + R+ + H T+ND
Sbjct: 1476 NGNVNRNPRVSNNNSTNVSRERSSEANHRTSND 1508
>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1220
Score = 31.9 bits (69), Expect = 0.25
Identities = 17/65 (26%), Positives = 32/65 (49%)
Query: 108 FKTPQENLYKSFKTSGRTSSNKQIILNETSLFTLSTDQYSEKNENITQLDKLNKSISSKI 167
+ T + ++ + +T + +++ ETS T++T YS E T LD N + + I
Sbjct: 79 YTTLTDGSIDTYTITAKTDTGTDVVVVETSANTITTTLYSGSLEFTTTLDSANGTTPATI 138
Query: 168 FHVDP 172
V+P
Sbjct: 139 EVVEP 143
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 31.1 bits (67), Expect = 0.44
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 124 RTSSNKQIILNETSLFTLSTDQYSEKNENITQLDKLNKSISSKIFHVDPRFLPDKNKKRK 183
R +SNK+I S+FTLS ++ S ++N T D L ++ + F DP L +
Sbjct: 533 RETSNKEIETTSPSIFTLSFER-SSSDDNDT--DTLGINLRALEFFYDPNLLLRVKGFQS 589
Query: 184 GVHNSTANKRITQAENSTSKVFQYRNVDVQHTTTNDKVK 222
+ + +++ + N F + V N+K K
Sbjct: 590 SLFANDNGRKLVRLANDAVTDFTSQTVQNLQEYLNEKRK 628
>SPBC428.18 |cdt1||replication licensing factor
Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 444
Score = 30.3 bits (65), Expect = 0.77
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Query: 139 FTLSTDQYSEKNENITQLDK---LNKSISSKI---FHVDPRFLPDKNKKRKG----VHNS 188
FT +T +Y+ + + + LD L+KS++SKI H + + ++K + S
Sbjct: 248 FTTNTAKYANELVSCSMLDSSSTLSKSVNSKINLKSHQSSSSVQNSSRKLTSSQLTLRQS 307
Query: 189 TANKRITQAENS--TSKVFQYRNVDVQHTTTNDKVKFFEIYD 228
+ R+ + + + K +++N V HT +KV F I D
Sbjct: 308 SLFDRVRKKQKAMEAKKAEEFKNNLVVHTLAKEKVSFVRIID 349
>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 30.3 bits (65), Expect = 0.77
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 41 IPRPFPGFQTSTPSFIEF---YYLHEIDES--NKGNMLHTDSHKLVDVKTKIDNVRHNSL 95
I PF GF T + I + + ID++ + ++H D H+++ ++K + L
Sbjct: 501 IMSPFVGFSILTAATIHMLLKFCVVNIDQNYISSSRLVHVD-HQILQDRSKYWKINQAML 559
Query: 96 RSVNAFYLFDRFFKTPQENLYKSFKTSG 123
++ Y F RF +++LY +FK G
Sbjct: 560 VTLQRLYNFYRFQYLEEQSLY-NFKIPG 586
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 29.9 bits (64), Expect = 1.0
Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 2/90 (2%)
Query: 41 IPRPFPGFQTSTPSFIEFYYLHEIDESNKGNMLHTDSHKLVDVKTKIDNVRHNSLRSVNA 100
+P P G ++ S + + ID K + + D HK+ D K + + R N + + A
Sbjct: 480 VPSPPKGTKSPMASSEQAQHQQVIDRMQK--LTNYDDHKINDFKFAVSSFRGNVMPAREA 537
Query: 101 FYLFDRFFKTPQENLYKSFKTSGRTSSNKQ 130
+ P E L F NK+
Sbjct: 538 VARITKLVAKPHEQLSGVFNQIANLLENKE 567
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 407 VRQQLYNIGLIRVINSMTSSCPDWGPISLMSHKFHANQNGSKAIAIGWGLDRYDS 461
V++++ NIG + N +T D P+ + S AN N W LD+ +S
Sbjct: 421 VQERIVNIGPNKPENRVTKEMLDTLPVRMFSGPHLANPNDELVYEKDWKLDKSES 475
>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 471
Score = 28.7 bits (61), Expect = 2.3
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 67 SNK-GNMLHTDSHKLVDVKTKIDNVRHNSLRSVN-AFYLFDRFFKTPQENLYKSFKTSGR 124
SNK N+L + K + +++ + SL S+N A YL+D F + + L K +
Sbjct: 2 SNKYNNLLKEVAAKYASII--LNDAKIKSLTSINSAEYLYDSFVEISKLPLEKKLPLKWK 59
Query: 125 TSSNKQIILNETSLFTLSTDQYSEKN 150
+ K+ I +T+L T +++ + N
Sbjct: 60 LITVKENICTKTNLTTAASNMLKDYN 85
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 28.7 bits (61), Expect = 2.3
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 162 SISSKIFHVD-PRFLPDKNKKRKGVHNSTANKRITQAENSTSKVFQYRNVDVQ-HTTTND 219
S S++ H++ P +PD + + + + A S + V + ++ H +
Sbjct: 259 SDSTRFSHLNVPAAIPDAPSVKTETSQNVSQLSVKSAATSLAPVEDDEDDELLLHRHITN 318
Query: 220 KVKFFEIYDSQLGFDHKESID 240
K K F ++ QLG HK S+D
Sbjct: 319 KHKDFNLHVKQLGLLHKPSLD 339
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 28.3 bits (60), Expect = 3.1
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 142 STDQYSEKNENIT----QLDKLNKSISSKIFHVDPRFLPDKNKKRKGVHN--STANKRIT 195
S+ QYS + N+T Q L+ S SS + H+ + + S+ N +
Sbjct: 543 SSFQYSSLSSNVTTTNAQSSSLSSSNSSALTHISSSIVSSGSSSALSSSTIVSSINSSSS 602
Query: 196 QAENSTSKVFQYRNVDVQHTTTNDKVKF 223
+S S QY + V TTT+ V F
Sbjct: 603 VFISSVSSSLQYSSSYVTETTTSGSVGF 630
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 27.9 bits (59), Expect = 4.1
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 118 SFKTSGRTSSNKQII-LNETSLFTLSTDQYSEKNENITQLDKLNKSISSKIFHVDPRFLP 176
S TS + + I+ LN++ L LS D+ S K+ + KS SS H D +P
Sbjct: 116 SSSTSVEDVNKENILSLNDSCLIKLSDDEASNKSSRSSTPRNSIKSNSSNQGHGDIP-IP 174
Query: 177 DKNKKRKGVHNSTANKRITQAE 198
KN R ++ N+ AE
Sbjct: 175 KKNPARSVCNSKLFNEDTLPAE 196
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 27.9 bits (59), Expect = 4.1
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
Query: 428 PDWGPISLMSHKFHANQN-GSKAIAIGWGLDRYDSRYSSSKMPKQALSVYEALLYSNDCP 486
PD G + LMS++ H N N + + I L + Y S + +L + P
Sbjct: 281 PD-GEVELMSYRSHENINIPFRIVPIVEQLSKQKIIYRISIRADYPHKLSSSLNFRIPVP 339
Query: 487 GNVGYRNSKKQFGDTG---TNNIYCLSLPRYFGE 517
NV N + G G + NI +PR+ GE
Sbjct: 340 TNVVKANPRVNRGKAGYEPSENIINWKIPRFLGE 373
>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 593
Score = 27.9 bits (59), Expect = 4.1
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 286 GFQIQESHNSVTTLNTSTKEMKTSSGRMRDISFRYEF 322
GF S ++ TT +T+T + SG +++I FRYEF
Sbjct: 546 GFDPTHSADASTTHSTATGLSR--SGSLKNIKFRYEF 580
>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 565
Score = 27.9 bits (59), Expect = 4.1
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 121 TSGRTSSNKQIILNETSLFTLSTDQYSEKNENITQLDKLNKSISSKIFHVDP 172
TS R ++ + +ILNE L + ++ +E +T+ KL++ K FH P
Sbjct: 23 TSPRYTAGRPVILNENQLIRYLPNYTNKGDEEVTRRKKLHEPNGPK-FHELP 73
>SPBC1604.20c |tea2|klp4|kinesin-like protein
Tea2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 27.9 bits (59), Expect = 4.1
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 109 KTPQENLYKSFKTSGRTSSNKQIILNETSLFTLSTDQYSEKNENITQLDKL 159
K P + L K+ R+SS++ NET L DQ K +++TQ +L
Sbjct: 578 KFPHKILKKNVTRGSRSSSDQ--FSNETKTEILPDDQQQSKKDSVTQETQL 626
>SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 263
Score = 27.9 bits (59), Expect = 4.1
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 421 NSMTSSCPDWGPISLMSHKFHANQNGSKAIAIG---WGLDRYDSRYSSSKMP 469
NS+ S P PIS + +FH + ++G +GL SRY+S P
Sbjct: 86 NSIGDSSPLLSPISPLKLRFHKYSVSKQLNSVGKQGFGLSSNHSRYASPSSP 137
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 142 STDQYSEKNENITQLDKLNKSISSKIFHVDPRFLPDKNKKRKGVHNSTANK-RITQAENS 200
+ + Y E + +D + K++SS +FH P+ H + A+ + + +
Sbjct: 1239 NVNTYCESRQQKDFIDLMGKTLSSVLFHAGKSSDPNLTVDFLAYHKAAADTFEVAKTQKK 1298
Query: 201 TSKVFQY 207
TS V+ +
Sbjct: 1299 TSSVYLF 1305
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 27.5 bits (58), Expect = 5.4
Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 17/140 (12%)
Query: 75 TDSHKLVDVKTKIDNVRHNSLRSVNAFYLFDRFFKTPQENLYKSFKTSGRTSS------- 127
T SH V K+D+ R SL+S N + + + +N S TS +
Sbjct: 54 TSSHIDPSVSAKLDSQRKLSLKSGNMWDSLNAPSELTSKNPTVSSTTSSANPAIVSNGGS 113
Query: 128 ----NKQIILNETSLFTLSTDQYSEKNENITQLDKLNKSISSKIFHVDPRFLPDKNKKRK 183
N + N +S F +ST+ ++ KN N + + S++ + P FL D
Sbjct: 114 PFYKNPVVANNPSSTFDMSTNLFNSKNANTS----FTNAFSNE--GISPGFLRDCFPSSN 167
Query: 184 GVHNSTANKRITQAENSTSK 203
+ TA+ ++ N ++
Sbjct: 168 SITTGTASPKLGSPFNHINR 187
>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
Vps32|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 187 NSTANKRITQAENSTSKVFQYRNVDVQHTTTNDKVKFFEIYDSQLGFD 234
N+T NKR+ K+ + V ++ + N + + F I ++ L F+
Sbjct: 52 NATTNKRLALTALKRKKMHENELVKIEGSRNNIEQQLFSIQNANLNFE 99
>SPBC800.07c |tsf1||mitochondrial translation elongation factor
EF-Ts Tsf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 299
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 182 RKGVHNSTANKRITQAENSTSKVFQYRNVDVQHTTTND 219
RKG+ N A + + Q +STS++ +R++ T D
Sbjct: 244 RKGLSNQIAKEIVAQDPSSTSELLSFRSLVDSEKTIKD 281
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 27.1 bits (57), Expect = 7.1
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 120 KTSGRTSSNKQIILNETSLFTLST---DQYSEKNENITQLDKLNKSISSKIFHVDPRFLP 176
KT S + I+ LF LST DQY K E I QL +NK+ + +++H R L
Sbjct: 30 KTPPPNDSKIESIVKAQILFLLSTLREDQYDTKLEQIRQL--INKN-APRVYHHFLRRLI 86
Query: 177 DKNKKR 182
N R
Sbjct: 87 QGNSYR 92
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 27.1 bits (57), Expect = 7.1
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 118 SFKTSGRTSSNKQIILNETSLFTLSTDQYSEKNENITQLDKLNKSISSKIFHVDPRFLPD 177
S + R S+K+I + E+ D+ S+ +EN + LNK S+ D
Sbjct: 12 SIRRRQRRGSSKRISMKES-------DEESDSSENHPLSESLNKKSKSESDEDDIPIRKR 64
Query: 178 KNKKRKGVHNSTANKR 193
+ +K + NS++ KR
Sbjct: 65 RASSKKNMSNSSSKKR 80
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 27.1 bits (57), Expect = 7.1
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 156 LDKLNKSISSKIFHVDPRFLPDKNKKRKGVHNSTANKRITQAENSTSKVFQYRNVDV 212
+ KLNKS SSK +DP L D + K H T + N+ ++ F++ N D+
Sbjct: 1085 MSKLNKSNSSKKIIIDP--LKD-SMKDLVQHAFTITAYDSNIHNALTRAFKHENGDL 1138
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 26.6 bits (56), Expect = 9.4
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 177 DKNKKRKGVHNSTANKRITQAENSTSKVFQ-----YRNVDVQHTTTNDKVKFFEIYDS-Q 230
+ K+R+ +H+ +R+ E ++FQ R+ + +H T +K K +E ++S
Sbjct: 6 ESRKRRRLIHSEKETRRLDLGEEDDLELFQKEAAWRRSREYEHLTVLEK-KLYEYWESLV 64
Query: 231 LGFDH 235
L DH
Sbjct: 65 LKLDH 69
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 26.6 bits (56), Expect = 9.4
Identities = 13/53 (24%), Positives = 21/53 (39%)
Query: 299 LNTSTKEMKTSSGRMRDISFRYEFVPWLNYPFMAVYVYEPLQVYCDSASISQH 351
L+ S+ E +S R D FR+ PW++ Y D+ + H
Sbjct: 185 LSASSSEENLNSNRNGDPKFRFSVSPWISSSNFNPYEASLANFQSDNCKLKSH 237
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 26.6 bits (56), Expect = 9.4
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 260 DFDAVQNNADTKLKHRKKHIIETNRNGFQIQESHNSVTTLNTSTKEMKTSSGRMRDISF 318
D D V N++ ++ +++ +I++ R + + +S LNT KTS+ + R ISF
Sbjct: 404 DDDFVSNSSIDRVLNQQAYILQYKR-----KSTSSSKHKLNTENTVTKTSNKKRRKISF 457
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.131 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,773,325
Number of Sequences: 5004
Number of extensions: 121041
Number of successful extensions: 378
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 367
Number of HSP's gapped (non-prelim): 27
length of query: 579
length of database: 2,362,478
effective HSP length: 77
effective length of query: 502
effective length of database: 1,977,170
effective search space: 992539340
effective search space used: 992539340
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)
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