GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000314-TA|BGIBMGA000314-PA|IPR002345|Lipocalin,
IPR001254|Peptidase S1 and S6, chymotrypsin/Hap, IPR009003|Peptidase,
trypsin-like serine and cysteine
         (579 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6361| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.36 
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.63 
SB_6715| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.63 
SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)                     32   1.5  
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)        31   3.4  
SB_32268| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   3.4  
SB_30515| Best HMM Match : Lyase_8 (HMM E-Value=1.2e-05)               30   4.4  
SB_34845| Best HMM Match : CXC (HMM E-Value=0.03)                      30   5.9  
SB_36855| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   5.9  
SB_28288| Best HMM Match : E-MAP-115 (HMM E-Value=0.076)               30   5.9  
SB_27869| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   5.9  
SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.8  
SB_33797| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.8  
SB_17890| Best HMM Match : Trypsin (HMM E-Value=3.2)                   29   7.8  

>SB_6361| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 530

 Score = 33.9 bits (74), Expect = 0.36
 Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 3/113 (2%)

Query: 119 FKTSGRTSSNKQIILNETSLFTLS--TDQYSEKNENITQLDKLNKSISSKIFHVDPRFLP 176
           F+T  + +S   +    TS   +      Y+  ++  T  + ++K  +S   +VD +   
Sbjct: 51  FQTLKKATSYNNVDKKATSYNNVDKKATSYNNVDKKATSYNNVDKKATS-YNNVDKKATS 109

Query: 177 DKNKKRKGVHNSTANKRITQAENSTSKVFQYRNVDVQHTTTNDKVKFFEIYDS 229
             N  +K    +  +K+ T   N  +K   Y NVD + T+ N+  K    Y++
Sbjct: 110 YNNVDKKATSYNNVDKKATSYNNVDNKATSYNNVDKKATSYNNVDKKATFYNN 162



 Score = 30.3 bits (65), Expect = 4.4
 Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 1/84 (1%)

Query: 146 YSEKNENITQLDKLNKSISSKIFHVDPRFLPDKNKKRKGVHNSTANKRITQAENSTSKVF 205
           Y+  ++  T  + ++   +S   +VD +     N  +K    +  +K+ T   N  +K  
Sbjct: 120 YNNVDKKATSYNNVDNKATS-YNNVDKKATSYNNVDKKATFYNNVDKKATSYNNVDNKAT 178

Query: 206 QYRNVDVQHTTTNDKVKFFEIYDS 229
            Y NVD + T  N+  K    Y++
Sbjct: 179 SYNNVDKKATFYNNVDKTATFYNN 202


>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 33.1 bits (72), Expect = 0.63
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)

Query: 343 CDSASISQHWLIASASCLSRHHENPGGY 370
           C  + IS  W++ +A C+ R ++NPGGY
Sbjct: 132 CGGSLISDRWVVTAAHCIHR-NKNPGGY 158


>SB_6715| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 169

 Score = 33.1 bits (72), Expect = 0.63
 Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 15/154 (9%)

Query: 23  KVNSTEKTKQYFLRKNLQIPRPFPGFQTSTPSFIEFYY--LHEIDESNKGNMLHTDSHKL 80
           K+NS+E   + F   + Q P     ++++ P F          ++ +   N+   +S   
Sbjct: 13  KINSSEHKNKSFEPDSNQRPGDH-NYKSTVPRFTNCAIEGWMNVERTINVNLPKINSIAP 71

Query: 81  VDVKTKIDNVRHNSLRSVNAFYLFDRFFKTPQENLYKSFKTSGRTSSNKQI-ILNETSLF 139
           V+VK     +R  +L SV+     +R F     N+ +++KTS    SN++I   N  S  
Sbjct: 72  VNVKNSYSRIRTINLGSVSK----ERNFHVTLPNIKRTYKTSFEPDSNQRIRDHNCKSTV 127

Query: 140 TLSTD------QYSEKNENITQLDKLNKSISSKI 167
             ST+       Y E+  N+T L K+N S   KI
Sbjct: 128 PRSTNGAIEGWMYIERTINVT-LPKINSSSRKKI 160


>SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 636

 Score = 31.9 bits (69), Expect = 1.5
 Identities = 28/134 (20%), Positives = 57/134 (42%), Gaps = 12/134 (8%)

Query: 342 YCDSASISQHWLIASASCLSRHHENPGGYGQSAFVTYCGDNWRQLERIAYVKYS----II 397
           +C    +S  W++ +A C+  H ++P  Y + A     G++ R        ++S    I+
Sbjct: 376 HCGGTLVSPQWVVTAAHCVD-HVKDPKNYNELAIT--LGEHKRSASEGTEQRFSVARIIV 432

Query: 398 HPKFRSHDRVRQQLYNIGLIRVINSMTSSCPDWGPISLMSHKFHANQNGSKAIAIGWGLD 457
           HP++     +     +I LI++  +  +    +  ++ +  +     +G    A GWGL 
Sbjct: 433 HPQYFEPTAINN---DIALIKL--NKPARLNKYVNLACLPRQGEELSDGKICYATGWGLT 487

Query: 458 RYDSRYSSSKMPKQ 471
                 S S + KQ
Sbjct: 488 VGGDWKSQSDVLKQ 501


>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
          Length = 2122

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 26/131 (19%), Positives = 59/131 (45%), Gaps = 4/131 (3%)

Query: 57  EFYYLHEIDESNKGNMLHTDSHKLVDVKTKIDNVRHNSLRSVNAFYLFDRFFKTPQENLY 116
           E  + HE++ S+  N L   S ++  +K ++DN + N  +S+ +  L     K  +E ++
Sbjct: 359 ELVHQHEVENSSLRNNLTRTSSQVTKLKCELDNAQRN--KSIGSAELGGERSKV-KELVH 415

Query: 117 KSFKTSGRTSSNKQIILNETSLFTLSTDQYSEKNENITQLDKLNKSISSKIFHVDPRFLP 176
           +  +   +   ++++I               E  E I  L+K  K  + +IF ++ + + 
Sbjct: 416 EIAELKEKLQESEKVIELRKKDLGKKDKTIEELKERIIVLEKSLKDKNDEIFGIEGK-IA 474

Query: 177 DKNKKRKGVHN 187
           +   K   +H+
Sbjct: 475 ELEAKNDRLHD 485


>SB_32268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 1/93 (1%)

Query: 149 KNENITQLDKLNKSISSKIFHVDPRFLPDKNKKRKGVHNSTANKRITQAENSTSKVFQYR 208
           K E     D   KS + K  ++  +    KN KRK +       +  + +N  +K  + +
Sbjct: 40  KEEEYEDKDWNMKSKNMKTKNIKTKKNTTKNMKRKNMKTKNMETKNVKTKNMKTKDMKTK 99

Query: 209 NVDVQHTTTNDKVKFFEIYDSQLGFDHKESIDY 241
           N+  ++ TT + +K  +  D + G +  E  +Y
Sbjct: 100 NIKTKNNTTKN-MKTNKKEDEKYGDEEYEDKEY 131


>SB_30515| Best HMM Match : Lyase_8 (HMM E-Value=1.2e-05)
          Length = 1364

 Score = 30.3 bits (65), Expect = 4.4
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 262  DAVQNNADTKLKHRKKHIIETNRNGFQIQESHNSVTTLNTSTKEMKTSSGRMRDISFRYE 321
            D +    +    HR   +++TN N + +         L    ++ KT SG++ D   RY 
Sbjct: 1036 DVLPERTEWNPAHRSAEVVDTNGNTYFVPNPTKQGLHLRVGDQKSKTDSGQV-DTQGRYA 1094

Query: 322  FVPWLNY 328
             V WL +
Sbjct: 1095 -VAWLKH 1100


>SB_34845| Best HMM Match : CXC (HMM E-Value=0.03)
          Length = 1397

 Score = 29.9 bits (64), Expect = 5.9
 Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 4/109 (3%)

Query: 95  LRSVNAFYLFDRFFKTPQENLYKSFKTSGRTSSNKQIILNETSLFTL--STDQYSEKNEN 152
           L+  N+F  ++        +  KS    GRT  +K + L   S++    S    +  +E 
Sbjct: 655 LKKENSFRKWESVLMRLSNSRTKSTLCKGRTEIDKNVTLLSASVYNTMDSCVAMASNSEE 714

Query: 153 ITQLDKLNKSISSKIFHVDPRFLPDKNKKRKGVHNSTANKRITQAENST 201
           IT++ ++ K++ +K   +  +     +  R G +  T +   +   NST
Sbjct: 715 ITEITEMRKALKNKFTEMKAK--AQFHSSRIGANAETFSTTTSLKTNST 761


>SB_36855| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score = 29.9 bits (64), Expect = 5.9
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 318 FRYEFVPW-----LNYPFMAVYVYEPLQVYCDSASISQHWLIASASCLSRHHEN 366
           F+Y F PW     L+Y +  + ++    +Y D  S+ +  ++ S   +   HE+
Sbjct: 56  FKYHFGPWTASRSLDYGYTRMTIHNKTHIYFDQFSVDKKMVVDSTWLIKDRHES 109


>SB_28288| Best HMM Match : E-MAP-115 (HMM E-Value=0.076)
          Length = 784

 Score = 29.9 bits (64), Expect = 5.9
 Identities = 13/47 (27%), Positives = 26/47 (55%)

Query: 260 DFDAVQNNADTKLKHRKKHIIETNRNGFQIQESHNSVTTLNTSTKEM 306
           DFD +Q   + +++ +K+    T    FQ++ +H S   L+ ST+ +
Sbjct: 488 DFDELQRQFEKEMRRKKREKEPTVVEPFQLRTAHLSAARLSKSTQSL 534


>SB_27869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 29.9 bits (64), Expect = 5.9
 Identities = 13/47 (27%), Positives = 26/47 (55%)

Query: 260 DFDAVQNNADTKLKHRKKHIIETNRNGFQIQESHNSVTTLNTSTKEM 306
           DFD +Q   + +++ +K+    T    FQ++ +H S   L+ ST+ +
Sbjct: 43  DFDELQRQFEKEMRRKKREKEPTVVEPFQLRTAHLSAARLSKSTQSL 89


>SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 903

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 35/148 (23%), Positives = 59/148 (39%), Gaps = 16/148 (10%)

Query: 170 VDPRFLPDKNKKRKGVHNSTANKRITQA-ENSTSKVFQYRNVDVQHTTTNDKVKFFEIYD 228
           ++   + D+   R   H +   KRI +  E  TSK  +   +  +  T    VKFFE   
Sbjct: 294 IEEEQVSDEFSGRAKSHRALFEKRIAEEKEVKTSKGVE-EEIAPKRGTAISAVKFFE--Q 350

Query: 229 SQLGFDHKESIDYIKIXXXXXXXXXXXXXXXDFDAVQNNADTKLKHRKKHIIETNR-NGF 287
            Q     KE  DY+ +                 D ++     K KH KKH  + ++ +  
Sbjct: 351 KQKEEFKKEETDYLDVFKKGGTTK---------DKIEKK--DKKKHHKKHKDKEHKEHHH 399

Query: 288 QIQESHNSVTTLNTSTKEMKTSSGRMRD 315
           + + SH+  ++     KE K S  + +D
Sbjct: 400 KKKRSHSKTSSTTDEEKERKKSETKNKD 427


>SB_33797| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 12/24 (50%), Positives = 18/24 (75%)

Query: 482 SNDCPGNVGYRNSKKQFGDTGTNN 505
           S D P  +GY++SK+Q G TG+N+
Sbjct: 11  SQDKPNLLGYKSSKRQGGVTGSNS 34


>SB_17890| Best HMM Match : Trypsin (HMM E-Value=3.2)
          Length = 157

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 3/76 (3%)

Query: 328 YPFMAVYVYEPLQVYCDSASISQHWLIASASCLS--RHHENPGGYGQSAFVTYCGDNWRQ 385
           +P+    +    QV C  + I   W+I +  C    R   +P  +           + R 
Sbjct: 65  WPWQVALLLNDRQV-CAGSLIEARWIITAGHCFKDPRSSADPDKWKVLLGERRRHSSKRH 123

Query: 386 LERIAYVKYSIIHPKF 401
            ER   VK  I+HPKF
Sbjct: 124 FERAQQVKRIIVHPKF 139


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.131    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,217,708
Number of Sequences: 59808
Number of extensions: 796611
Number of successful extensions: 2137
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2117
Number of HSP's gapped (non-prelim): 21
length of query: 579
length of database: 16,821,457
effective HSP length: 86
effective length of query: 493
effective length of database: 11,677,969
effective search space: 5757238717
effective search space used: 5757238717
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)