GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000313-TA|BGIBMGA000313-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (298 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ...    30   0.35 
SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr...    28   1.9  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    27   2.5  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   3.3  
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    26   7.5  

>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 12/28 (42%), Positives = 19/28 (67%)

Query: 183 NPFIYAIYNDGQSYRTRILSFRSTNDRC 210
           N F YAIY+DG+++R + +S   T+  C
Sbjct: 241 NQFKYAIYSDGKAWRVQAVSIDPTSFTC 268


>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 308

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 17/58 (29%), Positives = 25/58 (43%)

Query: 211 LYSTRKSINITPDDSLRLSTHSSVQYTNNQSRENGCECTKTEEAQARITARRYANMRM 268
           LYST     + PD    L+T  +   TNN + E      K  E Q   +A  + + R+
Sbjct: 238 LYSTEDGFELPPDQPADLTTALTDHDTNNVAEEAQMTDLKDSETQRVPSAPDFVHARL 295


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 213 STRKSINITPDDSLRLSTHSSVQYTNNQS 241
           S+ KSIN +P  S++LS  SS+    N S
Sbjct: 570 SSSKSINSSPSPSIQLSVSSSISRDKNLS 598


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/53 (26%), Positives = 27/53 (50%)

Query: 151 LLQSFFPSINEYRYINVIFFCFDWLAMSNSCYNPFIYAIYNDGQSYRTRILSF 203
           LL++F P++    +I++  F F WL+      +     IY  G++Y    ++F
Sbjct: 493 LLRTFLPTLVYSLFISISPFLFRWLSSMQGLSSRAEEEIYAVGKNYAYLFVNF 545


>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/60 (20%), Positives = 28/60 (46%)

Query: 176 AMSNSCYNPFIYAIYNDGQSYRTRILSFRSTNDRCLYSTRKSINITPDDSLRLSTHSSVQ 235
           A+SN+  +   +  +     +   +L+  +      Y  RK++ + PD S+   T+ S++
Sbjct: 441 AVSNTQVDQLFHVRHTRSLEHSVSLLAEMTKQINLFYEKRKTLAVIPDLSIEAKTYESLR 500


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.325    0.135    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,307,242
Number of Sequences: 5004
Number of extensions: 51029
Number of successful extensions: 179
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 173
Number of HSP's gapped (non-prelim): 6
length of query: 298
length of database: 2,362,478
effective HSP length: 72
effective length of query: 226
effective length of database: 2,002,190
effective search space: 452494940
effective search space used: 452494940
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 53 (25.4 bits)