GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000313-TA|BGIBMGA000313-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (298 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0116 + 19901546-19901737,19901825-19901899,19902034-199021...    35   0.069
06_01_1037 - 8140602-8140782,8141489-8141545,8141649-8141845,814...    28   7.9  

>02_04_0116 +
           19901546-19901737,19901825-19901899,19902034-19902115,
           19902219-19902298,19903279-19903482,19903625-19903750,
           19903872-19903985,19904802-19904918
          Length = 329

 Score = 35.1 bits (77), Expect = 0.069
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 5/87 (5%)

Query: 22  KVIIVFIWLLAFTLAAPMEMSWEVVMEDEIDPGTKLVYKKPFCTASEFGSNSLAIYRLLL 81
           K +I+F + L FT   P E++      D  D   KL  +    +     S +   Y + L
Sbjct: 99  KYVILFFYPLDFTFVCPTEIT---AFSDRYDEFEKLNTEILGVSIDSVWSRAFTSYFIAL 155

Query: 82  YIFQYVIPLCVITFAY--VHMAMKLWG 106
           Y +   IPL   TF +  + + ++LWG
Sbjct: 156 YSYDMSIPLIQKTFHFCSIFITIQLWG 182


>06_01_1037 -
           8140602-8140782,8141489-8141545,8141649-8141845,
           8143174-8143242,8143347-8143490,8144055-8144225
          Length = 272

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 231 HSSVQYTNNQSRENGCECTKTEEAQARITARRYANMRM 268
           H +V Y NN+      E   T  ++A    +RY N+R+
Sbjct: 116 HCAVHYDNNRRPTGSAEVIFTRRSEAVAALKRYNNVRL 153


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.325    0.135    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,745,679
Number of Sequences: 37544
Number of extensions: 276351
Number of successful extensions: 715
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 714
Number of HSP's gapped (non-prelim): 2
length of query: 298
length of database: 14,793,348
effective HSP length: 82
effective length of query: 216
effective length of database: 11,714,740
effective search space: 2530383840
effective search space used: 2530383840
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 60 (28.3 bits)