GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000313-TA|BGIBMGA000313-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (298 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13160.1 68416.m01646 pentatricopeptide (PPR) repeat-containi...    29   5.0  
At2g37230.1 68415.m04568 pentatricopeptide (PPR) repeat-containi...    29   5.0  
At1g67960.1 68414.m07763 expressed protein AT-AC non-consensus s...    29   5.0  
At1g49510.1 68414.m05549 expressed protein                             29   5.0  
At5g13950.1 68418.m01631 expressed protein                             28   6.6  
At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase fa...    28   6.6  
At5g25850.1 68418.m03067 F-box family protein contains F-box dom...    28   8.7  

>At3g13160.1 68416.m01646 pentatricopeptide (PPR)
          repeat-containing protein contains Pfam profile
          PF01535: PPR repeat
          Length = 394

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 6/77 (7%)

Query: 1  MKEFKARELFSYSAHTSKRVAKVIIVFIWLLAFTLAAPMEMSWEVVMEDEIDPGTKLVYK 60
          +  F  R  FS+S HT++R    +       A    +P + S   ++ DE DP       
Sbjct: 4  LSRFLLRGNFSFSTHTNRRFFSAVTA-----AAATPSPPKPSLITLVNDERDPKFITEKF 58

Query: 61 KPFCTASEFGSNSLAIY 77
          K  C A  F  N +A+Y
Sbjct: 59 KKACQAEWFRKN-IAVY 74


>At2g37230.1 68415.m04568 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 757

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 173 DWLAMSNSCYNPFIYAIYNDGQSYRTRILSFRSTNDR 209
           D L M  S YNP I  + N+GQ+ +  +L FR    R
Sbjct: 468 DTLEMEPSAYNPIIEYLCNNGQTAKAEVL-FRQLMKR 503


>At1g67960.1 68414.m07763 expressed protein AT-AC non-consensus
           splice sites at intron 6
          Length = 624

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/45 (31%), Positives = 24/45 (53%)

Query: 186 IYAIYNDGQSYRTRILSFRSTNDRCLYSTRKSINITPDDSLRLST 230
           +Y +YN  + +     SF       L+S+ K ++I+P + LR ST
Sbjct: 344 LYVVYNILEIFDRLCQSFCGDVFGALFSSAKGLSISPPEKLRFST 388


>At1g49510.1 68414.m05549 expressed protein
          Length = 240

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 218 INITPDDSLRLSTHSSVQYTNNQSRENGCECTKTEEAQARITAR 261
           ++ +P  SL L  HS+ Q+T + S+ N  +C+     +A+++ R
Sbjct: 8   LSSSPQSSLALRLHSTTQFTLSYSKNNK-DCSFQSANEAKVSKR 50


>At5g13950.1 68418.m01631 expressed protein 
          Length = 939

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/37 (29%), Positives = 22/37 (59%)

Query: 206 TNDRCLYSTRKSINITPDDSLRLSTHSSVQYTNNQSR 242
           T+ R  Y  ++  N +PD +LR   H ++++  N+S+
Sbjct: 18  TSSREHYRAKRKKNASPDGALRSGDHITLEWDRNRSK 54


>At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase family
            protein belongs to Pfam:PF03372:
            Endonuclease/Exonuclease/phosphatase family; contains 3
            WD-40 repeats (PF00400);similar to Type II
            inositol-1,4,5-trisphosphate 5-phosphatase EC 3.1.3.56
            (5PTASE) (INPP5B) (SP:P32019) [Homo sapiens]
          Length = 1305

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 220  ITPDDSLRLSTHSSVQYTNNQSREN-----GCECTKTEEAQARITARRYANMRMGCRHPN 274
            I PD S+ +S H    +T  +  +       CE T+ +EA   +  +   +    C   +
Sbjct: 1030 IKPDSSVEVSVHHEEFHTLEEFVDGIPQNWWCEDTRDKEAILVVNVQGGCSTETVCHRVH 1089

Query: 275  ARKCFSKTN 283
             R CFS  N
Sbjct: 1090 VRHCFSAKN 1098


>At5g25850.1 68418.m03067 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 481

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 143 WLPLQSYLLLQSFFPSINEYRYINVIFFCFDWLAMSNSCYNPFIYAIYNDGQSYRTRILS 202
           WL + S  L+ S FP+ N +R     F  FD   +S   +N  +Y   +D     + I +
Sbjct: 56  WLSVPSLELIYSIFPNFNTFRSFGDRF--FDSTRVS-CIHNLKLYFDEHDACYLTSWINA 112

Query: 203 FRSTNDRCLYSTR 215
           F + N R LY  R
Sbjct: 113 FVTRNIRRLYVRR 125


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.325    0.135    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,495,667
Number of Sequences: 28952
Number of extensions: 238939
Number of successful extensions: 673
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 670
Number of HSP's gapped (non-prelim): 7
length of query: 298
length of database: 12,070,560
effective HSP length: 81
effective length of query: 217
effective length of database: 9,725,448
effective search space: 2110422216
effective search space used: 2110422216
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 59 (27.9 bits)