GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000312-TA|BGIBMGA000312-PA|IPR002483|Splicing factor PWI
         (869 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16 pro...    25   2.9  
AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3 prot...    25   2.9  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   8.9  

>AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16
           protein.
          Length = 384

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)

Query: 326 DGRVHALDDVQETGLETVA 344
           DG V  LDD + TGLE +A
Sbjct: 64  DGSVSVLDDWEMTGLEELA 82


>AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3
           protein.
          Length = 384

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)

Query: 326 DGRVHALDDVQETGLETVA 344
           DG V  LDD + TGLE +A
Sbjct: 64  DGSVSVLDDWEMTGLEELA 82


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 12/37 (32%), Positives = 17/37 (45%)

Query: 464 NDGKTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSP 500
           N  K  SD   D E+    +I N      S+++TP P
Sbjct: 400 NGKKGSSDSCSDSEENSQSDITNNVNSPASMNQTPPP 436


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.305    0.124    0.335 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,184
Number of Sequences: 317
Number of extensions: 3511
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 3
length of query: 869
length of database: 114,650
effective HSP length: 63
effective length of query: 806
effective length of database: 94,679
effective search space: 76311274
effective search space used: 76311274
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)
S2: 47 (23.0 bits)